Co-expression analysis

Gene ID	Ta.12290.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g20696: HMGB3 (HIGH MOBILITY GROUP B 3) (HF=4e-1)
Module size	6 genes
NF	0.39
%ile	63.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.94	Ta.12290.2.S1_at	BJ260055	-	-	4e-1	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.95	TaAffx.29673.1.S1_at	CA637588	-	-	7e+0	At5g14240	-	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.95	TaAffx.65688.1.S1_at	BJ232502	-	-	2e+1	At3g02480	ABA-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.95	TaAffx.107438.1.S1_at	CA699780	-	-	1e-2	At3g26110	-	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.95	TaAffx.92350.1.S1_at	BJ269587	-	-	1e+0	At5g47306	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.94	Ta.16180.1.A1_at	BJ322793	-	-	1e+0	At1g03410	2A6	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.0	99.4	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
11.8	99.3	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
9.8	99.1	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
7.7	98.7	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.3	98.6	GSM111208	genotype F36 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
7.1	98.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.2	97.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.7	97.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6	97.0	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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