Co-expression analysis

Gene ID	Ta.12266.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g42500: disease resistance-responsive family protein (HF=1e+1)
Module size	6 genes
NF	0.04
%ile	11.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.77	Ta.12266.1.A1_at	BQ171977	-	-	1e+1	At5g42500	disease resistance-responsive family protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.92	Ta.2933.2.S1_a_at	BQ162297	-	-	7e+0	At4g04953	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.93	Ta.11732.1.A1_at	BQ170698	-	-	8e-2	At1g29120	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.93	Ta.6644.1.A1_at	BJ219316	-	-	4e-1	At1g13890	SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.93	TaAffx.33907.1.S1_at	AJ609988	-	-	8e+0	At5g03270	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.92	Ta.8708.1.A1_at	BQ162257	-	-	3e+0	At2g14692	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.7	99.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.5	99.2	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.5	98.9	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.6	98.3	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2	98.1	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.1	98.1	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0	94.3	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.1103.1.A1_at, orthologous to the query gene, Ta.12266.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.42	51.3	ZmAffx.1103.1.A1_at	At5g42500	-	-	1e+1	At5g43700	ATAUX2-11 (AUXIN INDUCIBLE 2-11)	O.I.	H.G.	S.X.	Please select
0.60	77.8	Zm.7054.1.S1_at	At5g42500	actin-depolymerizing factor 6	-	6e-4	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.53	69.1	Zm.12300.1.A1_at	At5g42500	ruBisCO large subunit-binding protein subunit alpha	-	1e-37	At2g28000	CPN60A (CHAPERONIN-60ALPHA)	O.I.	H.G.	S.X.	Please select
0.53	69.1	Zm.12184.1.A1_at	At5g42500	-	-	6e-10	At4g11960	PGRL1B (PGR5-Like B)	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.15242.1.A1_at	At5g42500	-	-	1e+1	At3g16712	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	ZmAffx.89.1.A1_at	At5g42500	hypothetical protein LOC100277768	-	1e+1	At5g20560	beta-1,3-glucanase, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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