Co-expression analysis

Gene ID	Ta.12266.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g42500: disease resistance-responsive family protein (HF=1e+1)
Module size	6 genes
NF	0.04
%ile	11.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.77	Ta.12266.1.A1_at	BQ171977	-	-	1e+1	At5g42500	disease resistance-responsive family protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.92	Ta.2933.2.S1_a_at	BQ162297	-	-	7e+0	At4g04953	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.93	Ta.11732.1.A1_at	BQ170698	-	-	8e-2	At1g29120	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.93	Ta.6644.1.A1_at	BJ219316	-	-	4e-1	At1g13890	SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.93	TaAffx.33907.1.S1_at	AJ609988	-	-	8e+0	At5g03270	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.92	Ta.8708.1.A1_at	BQ162257	-	-	3e+0	At2g14692	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.7	99.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.5	99.2	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.5	98.9	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.6	98.3	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2	98.1	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.1	98.1	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0	94.3	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the barley gene, HM10C10r_at, orthologous to the query gene, Ta.12266.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	89.8	HM10C10r_at	At5g42500	-	-	9e+0	At5g15160	bHLH family protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	HU01I17w_at	At5g42500	-	-	2e-5	At1g43670	fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative	O.I.	H.G.	S.X.	Please select
0.47	62.2	AF414176_at	At5g42500	-	-	4e+0	At5g58470	TAF15b (TBP-ASSOCIATED FACTOR 15b)	O.I.	H.G.	S.X.	Please select
0.45	59.3	Contig19916_at	At5g42500	-	-	8e-18	At5g04920	vacuolar protein sorting 36 family protein / VPS36 family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig9098_at	At5g42500	-	-	2e-8	At4g02350	exocyst complex subunit Sec15-like family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig16755_at	At5g42500	-	-	6e+0	At4g33100	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	HM05N21r_at	At5g42500	-	-	1e+0	At2g17120	LYM2 (LYSM DOMAIN GPI-ANCHORED PROTEIN 2 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.40	53.1	HVSMEg0013D15r2_s_at	At5g42500	-	-	7e-1	At1g56300	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig19855_s_at	At5g42500	-	-	1e-1	At2g07050	CAS1 (cycloartenol synthase 1)	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig14119_at	At5g42500	-	-	3e-5	At1g49010	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.37	47.9	Contig1221_s_at	At5g42500	-	-	5e+0	At5g19140	AILP1	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig7382_s_at	At5g42500	-	-	2e-13	At1g43670	fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative	O.I.	H.G.	S.X.	Please select
0.34	43.6	HVSMEb0005M02r2_at	At5g42500	-	-	1e+1	At3g23580	RNR2A (RIBONUCLEOTIDE REDUCTASE 2A)	O.I.	H.G.	S.X.	Please select
0.33	42.6	HU05I16u_at	At5g42500	-	-	3e+0	At4g28340	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	HM05N11r_at	At5g42500	-	-	9e-1	At2g40085	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig14714_at	At5g42500	P-type ATPase	-	3e-68	At2g22950	calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7)	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig4955_s_at	At5g42500	-	-	2e+0	At5g01840	OFP1 (OVATE FAMILY PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.31	38.6	ChlorContig3_at	At5g42500	-	-	6e-142	Atcg01110	-	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig6625_at	At5g42500	-	-	5e-30	At5g13030	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig19857_at	At5g42500	-	-	6e-1	At5g13660	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig1291_at	At5g42500	-	-	2e-12	At2g43750	OASB (O-ACETYLSERINE (THIOL) LYASE B)	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig3432_s_at	At5g42500	-	-	3e-2	At4g14690	ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig26206_at	At5g42500	-	-	7e-2	At4g21620	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	HVSMEc0002F03f_at	At5g42500	-	-	2e+0	At1g69526	UbiE/COQ5 methyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig6231_at	At5g42500	-	-	4e-17	At5g11900	eukaryotic translation initiation factor SUI1 family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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