CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.12266.1.A1_at

Gene name
Homology with Arabidopsis Similar to At5g42500: disease resistance-responsive family protein (HF=1e+1)

Module size 6 genes

NF 0.04

%ile 11.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.77 Ta.12266.1.A1_at BQ171977 - - 1e+1 At5g42500 disease resistance-responsive family protein O.I. H.G. S.X.
0.36 51.9 0.92 Ta.2933.2.S1_a_at BQ162297 - - 7e+0 At4g04953 unknown protein O.I. H.G. S.X.
0.13 14.6 0.93 Ta.11732.1.A1_at BQ170698 - - 8e-2 At1g29120 unknown protein O.I. H.G. S.X.
0.04 5.8 0.93 Ta.6644.1.A1_at BJ219316 - - 4e-1 At1g13890 SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30) O.I. H.G. S.X.
0.02 3.6 0.93 TaAffx.33907.1.S1_at AJ609988 - - 8e+0 At5g03270 unknown protein O.I. H.G. S.X.
0.01 2.4 0.92 Ta.8708.1.A1_at BQ162257 - - 3e+0 At2g14692 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.7 99.5 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.5 99.2 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.5 98.9 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.6 98.3 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2 98.1 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
6.1 98.1 GSM314273 tissue type: floral bracts, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
3.6 95.6 GSM314272 tissue type: floral bracts, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
3.6 95.6 GSM314274 tissue type: floral bracts, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
3.6 95.6 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0 94.3 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g42500, orthologous to the query gene, Ta.12266.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.36 43.6 At5g42500 834257 disease resistance-responsive family protein F:molecular_function unknown;P:defense response;C:endomembrane system;P O.I. H.G. S.X.
0.26 24.4 At4g26010 828707 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO O.I. H.G. S.X.
0.25 22.6 At4g25220 828625 transporter, putative F:transporter activity;P:transport;C:unknown;BOFMAP O.I. H.G. S.X.
0.24 20.7 At3g54590 824624 ATHRGP1 (HYDROXYPROLINE-RICH GLYCOPROTEIN) Encodes a hydroxyproline-rich glycoprotein. O.I. H.G. S.X.
0.21 15.8 At5g19800 832100 hydroxyproline-rich glycoprotein family protein F:unknown;P:biological_process unknown;C:endomembrane system;MPOFBVA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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