Co-expression analysis

Gene ID	Ta.12197.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g48231: LCR48 (Low-molecular-weight cysteine-rich 48) (HF=5e+0)
Module size	27 genes
NF	0.40
%ile	64.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	92.4	0.96	Ta.12197.1.A1_at	BQ801071	-	-	5e+0	At3g48231	LCR48 (Low-molecular-weight cysteine-rich 48)	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.97	Ta.8474.1.A1_at	BQ161952	-	-	6e-15	At3g06483	PDK (PYRUVATE DEHYDROGENASE KINASE)	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.97	Ta.16668.1.S1_x_at	CK212492	-	-	2e+0	At3g54826	-	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.97	Ta.25681.1.S1_at	AJ614892	-	-	3e-2	At2g22145	-	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.97	Ta.5857.1.S1_at	BJ297508	-	-	8e-1	At2g17730	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.97	Ta.11874.1.S1_at	BQ170969	-	-	2e+0	At5g39530	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.97	Ta.2839.1.S1_at	CD876245	-	-	8e-4	At4g00026	-	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.97	Ta.12532.1.S1_at	BQ166155	-	-	2e-8	At5g52580	RAB GTPase activator	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.97	Ta.14353.1.S1_at	BU100478	-	-	5e-4	At5g52200	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.97	Ta.9300.1.S1_at	BJ238999	-	-	5e-1	At3g08770	LTP6	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.97	Ta.20656.1.S1_at	CA686685	-	-	5e-1	At5g53470	ACBP1 (ACYL-COA BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	Ta.13236.1.S1_at	BM136267	SUSIBA2-like protein	-	2e-18	At4g26640	WRKY20	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.97	Ta.6290.1.S1_at	BJ301403	-	-	1e-10	At1g49010	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.97	Ta.7540.2.S1_at	BJ320845	-	-	4e-6	At3g07260	forkhead-associated domain-containing protein / FHA domain-containing protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.98	Ta.7296.1.S1_at	BJ252648	-	-	4e-5	At3g45000	VPS24.2	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.97	Ta.1602.2.S1_at	CA685259	-	-	3e+0	At2g24970	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.97	Ta.1602.1.S1_at	CA721317	-	-	2e+0	At5g55200	co-chaperone grpE protein, putative	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.97	Ta.1597.1.S1_at	BQ161355	-	-	2e-5	At5g61060	HDA05 (HISTONE DEACETYLASE 5)	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.98	Ta.7299.1.S1_at	CK162098	-	-	6e-36	At3g59920	ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.97	Ta.2528.1.S1_at	CD919475	-	-	3e-3	At4g15470	-	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.98	Ta.1602.1.S1_x_at	CA721317	-	-	2e+0	At5g55200	co-chaperone grpE protein, putative	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.97	Ta.1709.1.S1_at	CK208738	-	-	2e-53	At2g27600	SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.97	Ta.22913.1.S1_at	CA715053	-	-	1e+1	At5g61200	-	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.97	Ta.28553.13.S1_at	BJ300199	-	-	5e-138	At4g05320	UBQ10 (POLYUBIQUITIN 10)	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.98	Ta.1709.1.S1_x_at	CK208738	-	-	2e-53	At2g27600	SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.97	Ta.9049.3.S1_a_at	CA611142	-	-	1e+0	At4g20520	RNA binding / RNA-directed DNA polymerase	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.97	Ta.13231.1.S1_at	BJ286554	vacuolar proton ATPase subunit E	-	7e-35	At4g11150	TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	97.4	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.7	97.1	GSM139932	Anther mature anthers rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.5	96.9	GSM139933	Anther mature anthers rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.0	96.3	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
3.0	94.3	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.0	94.3	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
2.9	94.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.7	93.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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