CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.12174.1.A1_at

Gene name
Homology with Arabidopsis Similar to At3g03690: UNE7 (unfertilized embryo sac 7) (HF=1e-14)

Module size 18 genes

NF 0.22

%ile 37.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.97 99.6 0.92 Ta.12174.1.A1_at CD452810 - - 1e-14 At3g03690 UNE7 (unfertilized embryo sac 7) O.I. H.G. S.X.
0.32 44.4 0.96 TaAffx.130636.1.S1_at CK204104 - - 7e+0 At4g24930 thylakoid lumenal 17.9 kDa protein, chloroplast O.I. H.G. S.X.
0.29 39.2 0.97 TaAffx.111033.1.A1_at BF474671 - - 9e-1 At1g26530 unknown protein O.I. H.G. S.X.
0.28 39.2 0.97 Ta.5749.1.S1_a_at CA674746 - - 3e-2 At2g32710 KRP4 O.I. H.G. S.X.
0.26 33.6 0.96 Ta.12189.1.A1_at BQ171777 - - 1e+0 At3g28560 - O.I. H.G. S.X.
0.25 32.1 0.96 Ta.3894.1.S1_at CA643759 - - 2e+0 At2g15590 unknown protein O.I. H.G. S.X.
0.23 29.0 0.95 Ta.10612.1.S1_at BJ294990 - - 2e-1 At4g32400 SHS1 (SODIUM HYPERSENSITIVE 1) O.I. H.G. S.X.
0.23 29.0 0.95 TaAffx.72129.1.S1_at CA688265 - - 6e-1 At5g22520 unknown protein O.I. H.G. S.X.
0.23 29.0 0.95 Ta.3337.1.S1_s_at BJ308110 - - 7e-10 At5g09860 nuclear matrix protein-related O.I. H.G. S.X.
0.21 25.5 0.96 TaAffx.130361.1.S1_at CK166477 - - 3e-8 At1g14990 unknown protein O.I. H.G. S.X.
0.18 21.0 0.96 Ta.16758.1.A1_at CA611957 - - 3e+0 At1g21430 YUC11 O.I. H.G. S.X.
0.18 21.0 0.96 Ta.10616.1.A1_at BT009024.1 - - 5e-4 At1g50380 prolyl oligopeptidase family protein O.I. H.G. S.X.
0.18 21.0 0.96 Ta.6460.1.S1_s_at CK205976 PHD zinc finger protein - 4e-11 At2g02470 AL6 (ALFIN-LIKE 6) O.I. H.G. S.X.
0.17 19.8 0.97 Ta.6987.1.A1_at BJ319194 - - 4e+0 At1g07610 MT1C O.I. H.G. S.X.
0.17 19.8 0.96 Ta.19090.1.S1_at CA647059 - - 1e+1 At5g42965 nucleic acid binding / ribonuclease H O.I. H.G. S.X.
0.15 17.1 0.96 Ta.3974.1.S1_at BQ802111 - - 8e-13 At4g39100 SHL1 (short life) O.I. H.G. S.X.
0.13 14.6 0.97 Ta.7571.1.S1_at BE428141 - - 2e+0 At5g24105 AGP41 (ARABINOGALACTAN-PROTEIN 41) O.I. H.G. S.X.
0.10 11.3 0.96 Ta.2915.1.S1_a_at BJ214417 - - 4e+0 At5g48890 transcription factor O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.6 98.3 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
5.0 97.4 GSM139933 Anther mature anthers rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.5 96.9 GSM139932 Anther mature anthers rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.5 96.9 GSM139931 Anther maturea nthers rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.1 96.4 GSM139928 Anther immature pollen rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.1 96.4 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9 96.1 GSM314279 tissue type: anthers, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
3.3 95.0 GSM314280 tissue type: anthers, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
3.2 94.8 GSM139925 Anther tetrads rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.2 94.8 GSM139923 Anther telophaseI-telophaseII rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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