Co-expression analysis

Gene ID Ta.12123.1.S1_a_at
Gene name
Homology with ArabidopsisSimilar to At5g56280: CSN6A (HF=7e-32)
Module size 6 genes
NF 0.58
%ile 84.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6786.30.98Ta.12123.1.S1_a_atBQ171638--7e-32At5g56280CSN6AO.I.H.G.S.X.
0.7389.10.98Ta.9455.1.S1_atCK216399--5e-23At1g11890SEC22O.I.H.G.S.X.
0.6786.30.98Ta.18139.1.A1_a_atBJ308447--4e+0At5g26220ChaC-like family proteinO.I.H.G.S.X.
0.6081.00.98Ta.4468.1.S1_atCK214137Cop8-4e-52At5g42970COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)O.I.H.G.S.X.
0.4260.90.98Ta.1604.1.S1_atCK155787--6e-8At5g63840RSW3 (RADIAL SWELLING 3)O.I.H.G.S.X.
0.4058.40.98Ta.1309.1.S1_a_atBJ282817--1e+0At5g50960NBP35 (NUCLEOTIDE BINDING PROTEIN 35)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.198.1GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.197.5GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.697.0GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.697.0GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.596.9GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.496.8GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.396.7GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.396.7GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.495.2GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.294.8GSM314277tissue type: pistil, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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