Co-expression analysis

Gene ID	Ta.12123.1.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At5g56280: CSN6A (HF=7e-32)
Module size	6 genes
NF	0.58
%ile	84.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.98	Ta.12123.1.S1_a_at	BQ171638	-	-	7e-32	At5g56280	CSN6A	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.98	Ta.9455.1.S1_at	CK216399	-	-	5e-23	At1g11890	SEC22	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.98	Ta.18139.1.A1_a_at	BJ308447	-	-	4e+0	At5g26220	ChaC-like family protein	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.98	Ta.4468.1.S1_at	CK214137	Cop8	-	4e-52	At5g42970	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.98	Ta.1604.1.S1_at	CK155787	-	-	6e-8	At5g63840	RSW3 (RADIAL SWELLING 3)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.98	Ta.1309.1.S1_a_at	BJ282817	-	-	1e+0	At5g50960	NBP35 (NUCLEOTIDE BINDING PROTEIN 35)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	98.1	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
5.1	97.5	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
4.5	96.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
3.4	95.2	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.2	94.8	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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