Co-expression analysis

Gene ID	Ta.12116.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g18240: RER1 protein, putative (HF=1e+0)
Module size	6 genes
NF	0.50
%ile	76.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	76.8	0.96	Ta.12116.1.A1_at	BQ171628	-	-	1e+0	At2g18240	RER1 protein, putative	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.96	TaAffx.37681.1.S1_at	BJ274198	-	-	2e+0	At5g36960	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.96	Ta.2401.1.A1_at	CD883832	-	-	2e-1	At1g02440	ATARFD1A (ADP-ribosylation factor D1A)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.96	Ta.27940.1.A1_s_at	BQ169626	-	-	1e+0	At1g01380	ETC1 (ENHANCER OF TRY AND CPC 1)	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.96	Ta.12929.1.S1_at	CD938190	-	-	2e+0	At4g24275	-	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.96	TaAffx.61664.2.S1_s_at	CA712482	-	-	1e+0	At4g00232	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.2	98.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.0	98.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.2	98.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.0	97.4	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5	95.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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