Co-expression analysis

Gene ID	Ta.12104.2.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At5g53350: CLPX (HF=1e-21)
Module size	6 genes
NF	0.42
%ile	66.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.4	0.96	Ta.12104.2.S1_a_at	CA633742	-	-	1e-21	At5g53350	CLPX	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.96	TaAffx.107805.1.S1_at	CA695039	-	-	2e-4	At2g36790	UGT73C6 (UDP-glucosyl transferase 73C6)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.96	Ta.12066.1.S1_s_at	BQ171512	-	-	5e-6	At4g24160	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.96	Ta.3064.3.S1_a_at	CA629476	-	-	1e+0	At3g47710	bHLH family protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.96	Ta.28628.1.A1_at	BQ162670	-	-	6e+0	At3g22260	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.96	Ta.29215.1.S1_at	CD934480	-	-	5e-5	At1g73650	oxidoreductase, acting on the CH-CH group of donors	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.3	98.6	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.6	98.3	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.1	98.1	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.7	97.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6	97.8	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.5	97.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5	96.9	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.223283.1.S1_at, orthologous to the query gene, Ta.12104.2.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	PtpAffx.223283.1.S1_at	At5g53350	hypothetical protein	-	2e-17	At5g49840	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.145334.1.A1_at	At5g53350	hypothetical protein	-	7e+0	At5g55630	ATKCO1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.7205.1.A1_s_at	At5g53350	hypothetical protein	-	6e-1	At1g48540	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.159650.1.A1_a_at	At5g53350	-	-	4e-1	At2g28480	RNA binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.200653.1.S1_s_at	At5g53350	PAF1 complex component	-	7e-5	At1g79730	ELF7 (EARLY FLOWERING 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.208809.1.S1_x_at	At5g53350	hypothetical protein	-	6e-9	At1g60200	splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage