CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.12104.2.S1_a_at

Gene name
Homology with Arabidopsis Similar to At5g53350: CLPX (HF=1e-21)

Module size 6 genes

NF 0.42

%ile 66.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 72.4 0.96 Ta.12104.2.S1_a_at CA633742 - - 1e-21 At5g53350 CLPX O.I. H.G. S.X.
0.67 86.3 0.96 TaAffx.107805.1.S1_at CA695039 - - 2e-4 At2g36790 UGT73C6 (UDP-glucosyl transferase 73C6) O.I. H.G. S.X.
0.40 58.4 0.96 Ta.12066.1.S1_s_at BQ171512 - - 5e-6 At4g24160 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.40 58.4 0.96 Ta.3064.3.S1_a_at CA629476 - - 1e+0 At3g47710 bHLH family protein O.I. H.G. S.X.
0.34 48.1 0.96 Ta.28628.1.A1_at BQ162670 - - 6e+0 At3g22260 OTU-like cysteine protease family protein O.I. H.G. S.X.
0.29 39.2 0.96 Ta.29215.1.S1_at CD934480 - - 5e-5 At1g73650 oxidoreductase, acting on the CH-CH group of donors O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.3 98.6 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.6 98.3 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.1 98.1 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.7 97.9 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6 97.8 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.5 97.8 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5 96.9 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
4.3 96.7 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8 96.0 GSM314270 tissue type: immature inflorescence - rep2 GSE12508 Transcription patterns during wheat development
3.1 94.5 GSM314269 tissue type: immature inflorescence - rep1 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the rice gene, Os02g0564400, orthologous to the query gene, Ta.12104.2.S1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 Os02g0564400 At5g53350 - ATP-dependent Clp protease ATP-binding subunitClpX-like, mitochondrial precursor 2e-42 At5g53350 CLPX O.I. H.G. S.X.
0.55 73.7 Os02g0805500 At5g53350 - PAP-specific phosphatase HAL2-like(3'(2'),5'-bisphosphate nucleotidase) (EC 3.1.3.7)(3'(2'),5-bisphosphonucleoside 3'(2')- phosphohydrolase)(DPNPase) (Halotolerance protein) 2e-8 At5g54390 AHL (ARABIDOPSIS HAL2-LIKE) O.I. H.G. S.X.
0.27 27.5 Os07g0583200 At5g53350 - Mitochodrial transcription terminationfactor-related family protein 4e-3 At5g55580 mitochondrial transcription termination factor family protein / mTERF family protein O.I. H.G. S.X.
0.22 19.4 Os06g0146400 At5g53350 - - 3e-2 At1g10500 ATCPISCA (chloroplast-localized IscA-like protein) O.I. H.G. S.X.
0.21 17.9 Os06g0625400 At5g53350 - Peptidase M16, C-terminal domain containingprotein 5e-41 At5g42390 metalloendopeptidase O.I. H.G. S.X.
0.14 9.3 Os10g0502500 At5g53350 - Cytochrome b5 domain containing protein 4e-14 At3g48890 ATMP2 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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