Co-expression analysis

Gene ID Ta.12104.2.S1_a_at
Gene name
Homology with ArabidopsisSimilar to At5g53350: CLPX (HF=1e-21)
Module size 6 genes
NF 0.42
%ile 66.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5072.40.96Ta.12104.2.S1_a_atCA633742--1e-21At5g53350CLPXO.I.H.G.S.X.
0.6786.30.96TaAffx.107805.1.S1_atCA695039--2e-4At2g36790UGT73C6 (UDP-glucosyl transferase 73C6)O.I.H.G.S.X.
0.4058.40.96Ta.12066.1.S1_s_atBQ171512--5e-6At4g24160hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.4058.40.96Ta.3064.3.S1_a_atCA629476--1e+0At3g47710bHLH family proteinO.I.H.G.S.X.
0.3448.10.96Ta.28628.1.A1_atBQ162670--6e+0At3g22260OTU-like cysteine protease family proteinO.I.H.G.S.X.
0.2939.20.96Ta.29215.1.S1_atCD934480--5e-5At1g73650oxidoreductase, acting on the CH-CH group of donorsO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.398.6GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.698.3GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.198.1GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.797.9GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.697.8GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.597.8GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.596.9GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.396.7GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.896.0GSM314270tissue type: immature inflorescence - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.194.5GSM314269tissue type: immature inflorescence - rep1GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.39589.1.S1_at, orthologous to the query gene, Ta.12104.2.S1_a_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6786.1GmaAffx.39589.1.S1_atAt5g53350--2e-74At1g33360ATP-dependent Clp protease ATP-binding subunit ClpX, putativeO.I.H.G.S.X.
0.6382.9GmaAffx.1815.2.S1_atAt5g53350--1e-43At5g66470GTP binding / RNA bindingO.I.H.G.S.X.
0.5273.1GmaAffx.93066.1.S1_s_atAt5g53350--7e-36At4g29670thioredoxin family proteinO.I.H.G.S.X.
0.5071.7Gma.18060.1.S1_atAt5g53350--8e-22At3g04870ZDS (ZETA-CAROTENE DESATURASE)O.I.H.G.S.X.
0.4360.6GmaAffx.32100.1.S1_atAt5g53350--1e+0At2g28110FRA8 (FRAGILE FIBER 8)O.I.H.G.S.X.
0.4158.1GmaAffx.17286.2.S1_atAt5g53350--2e-17At5g09230SRT2 (SIRTUIN 2)O.I.H.G.S.X.
0.4158.1Gma.16537.2.S1_atAt5g53350--1e-49At3g05350aminopeptidase/ hydrolaseO.I.H.G.S.X.
0.3548.6Gma.6061.1.S1_s_atAt5g53350--1e+0At4g32915-O.I.H.G.S.X.
0.2939.0Gma.1323.1.S1_atAt5g53350--2e-3At3g24590PLSP1 (plastidic type I signal peptidase 1)O.I.H.G.S.X.
0.2430.9Gma.8154.1.S1_atAt5g53350--5e-35At2g33430DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)O.I.H.G.S.X.
0.2228.1Gma.2500.1.S1_atAt5g53350--6e-7At5g17990TRP1 (tryptophan biosynthesis 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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