CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.12104.2.S1_a_at

Gene name
Homology with Arabidopsis Similar to At5g53350: CLPX (HF=1e-21)

Module size 6 genes

NF 0.42

%ile 66.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 72.4 0.96 Ta.12104.2.S1_a_at CA633742 - - 1e-21 At5g53350 CLPX O.I. H.G. S.X.
0.67 86.3 0.96 TaAffx.107805.1.S1_at CA695039 - - 2e-4 At2g36790 UGT73C6 (UDP-glucosyl transferase 73C6) O.I. H.G. S.X.
0.40 58.4 0.96 Ta.12066.1.S1_s_at BQ171512 - - 5e-6 At4g24160 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.40 58.4 0.96 Ta.3064.3.S1_a_at CA629476 - - 1e+0 At3g47710 bHLH family protein O.I. H.G. S.X.
0.34 48.1 0.96 Ta.28628.1.A1_at BQ162670 - - 6e+0 At3g22260 OTU-like cysteine protease family protein O.I. H.G. S.X.
0.29 39.2 0.96 Ta.29215.1.S1_at CD934480 - - 5e-5 At1g73650 oxidoreductase, acting on the CH-CH group of donors O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.3 98.6 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.6 98.3 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.1 98.1 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.7 97.9 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6 97.8 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.5 97.8 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5 96.9 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
4.3 96.7 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8 96.0 GSM314270 tissue type: immature inflorescence - rep2 GSE12508 Transcription patterns during wheat development
3.1 94.5 GSM314269 tissue type: immature inflorescence - rep1 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.39589.1.S1_at, orthologous to the query gene, Ta.12104.2.S1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 86.1 GmaAffx.39589.1.S1_at At5g53350 - - 2e-74 At1g33360 ATP-dependent Clp protease ATP-binding subunit ClpX, putative O.I. H.G. S.X.
0.63 82.9 GmaAffx.1815.2.S1_at At5g53350 - - 1e-43 At5g66470 GTP binding / RNA binding O.I. H.G. S.X.
0.52 73.1 GmaAffx.93066.1.S1_s_at At5g53350 - - 7e-36 At4g29670 thioredoxin family protein O.I. H.G. S.X.
0.50 71.7 Gma.18060.1.S1_at At5g53350 - - 8e-22 At3g04870 ZDS (ZETA-CAROTENE DESATURASE) O.I. H.G. S.X.
0.43 60.6 GmaAffx.32100.1.S1_at At5g53350 - - 1e+0 At2g28110 FRA8 (FRAGILE FIBER 8) O.I. H.G. S.X.
0.41 58.1 GmaAffx.17286.2.S1_at At5g53350 - - 2e-17 At5g09230 SRT2 (SIRTUIN 2) O.I. H.G. S.X.
0.41 58.1 Gma.16537.2.S1_at At5g53350 - - 1e-49 At3g05350 aminopeptidase/ hydrolase O.I. H.G. S.X.
0.35 48.6 Gma.6061.1.S1_s_at At5g53350 - - 1e+0 At4g32915 - O.I. H.G. S.X.
0.29 39.0 Gma.1323.1.S1_at At5g53350 - - 2e-3 At3g24590 PLSP1 (plastidic type I signal peptidase 1) O.I. H.G. S.X.
0.24 30.9 Gma.8154.1.S1_at At5g53350 - - 5e-35 At2g33430 DAL1 (DIFFERENTIATION AND GREENING-LIKE 1) O.I. H.G. S.X.
0.22 28.1 Gma.2500.1.S1_at At5g53350 - - 6e-7 At5g17990 TRP1 (tryptophan biosynthesis 1) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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