CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.12104.2.S1_a_at

Gene name
Homology with Arabidopsis Similar to At5g53350: CLPX (HF=1e-21)

Module size 6 genes

NF 0.42

%ile 66.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 72.4 0.96 Ta.12104.2.S1_a_at CA633742 - - 1e-21 At5g53350 CLPX O.I. H.G. S.X.
0.67 86.3 0.96 TaAffx.107805.1.S1_at CA695039 - - 2e-4 At2g36790 UGT73C6 (UDP-glucosyl transferase 73C6) O.I. H.G. S.X.
0.40 58.4 0.96 Ta.12066.1.S1_s_at BQ171512 - - 5e-6 At4g24160 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.40 58.4 0.96 Ta.3064.3.S1_a_at CA629476 - - 1e+0 At3g47710 bHLH family protein O.I. H.G. S.X.
0.34 48.1 0.96 Ta.28628.1.A1_at BQ162670 - - 6e+0 At3g22260 OTU-like cysteine protease family protein O.I. H.G. S.X.
0.29 39.2 0.96 Ta.29215.1.S1_at CD934480 - - 5e-5 At1g73650 oxidoreductase, acting on the CH-CH group of donors O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.3 98.6 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.6 98.3 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.1 98.1 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.7 97.9 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6 97.8 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.5 97.8 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5 96.9 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
4.3 96.7 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8 96.0 GSM314270 tissue type: immature inflorescence - rep2 GSE12508 Transcription patterns during wheat development
3.1 94.5 GSM314269 tissue type: immature inflorescence - rep1 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g53350, orthologous to the query gene, Ta.12104.2.S1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.36 43.6 At5g53350 835416 CLPX CLP protease regulatory subunit CLPX mRNA, nuclear gene O.I. H.G. S.X.
0.40 50.8 At1g12050 837757 fumarylacetoacetase, putative F:fumarylacetoacetase activity, catalytic activity;P:aromatic amino acid family metabolic process, metabolic process;C:cellular_component unknown;BOMFAP O.I. H.G. S.X.
0.33 38.1 At4g36210 829778 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOBPA O.I. H.G. S.X.
0.27 26.2 At3g27820 822402 MDAR4 (MONODEHYDROASCORBATE REDUCTASE 4) Encodes a peroxisome membrane-bound monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2 O.I. H.G. S.X.
0.25 22.6 At4g29010 829022 AIM1 (ABNORMAL INFLORESCENCE MERISTEM) Functions in beta-oxidation of fatty acids, similar to CuMFP with L-3-hydroxyacyl-CoA hydrolyase , L-3-hydroxyacyl-dehydrogenase, D-3-hydroxyacyl-CoA epimerase, and 3, 2-enoyl-CoA isomerase activities O.I. H.G. S.X.
0.17 10.2 At1g47128 841122 RD21 (responsive to dehydration 21) cysteine proteinase precursor-like protein/ dehydration stress-responsive gene (RD21) O.I. H.G. S.X.
0.15 7.8 At3g03890 821082 FMN binding F:FMN binding;P:unknown;C:chloroplast;BOPM O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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