CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.12083.1.A1_at

Gene name
Homology with Arabidopsis Similar to At5g17470: calmodulin-related protein, putative (HF=1e+0)

Module size 6 genes

NF 0.45

%ile 70.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.96 Ta.12083.1.A1_at CD885615 - - 1e+0 At5g17470 calmodulin-related protein, putative O.I. H.G. S.X.
0.73 89.1 0.97 Ta.25402.1.S1_at CK160504 - - 4e-42 At1g11430 plastid developmental protein DAG, putative O.I. H.G. S.X.
0.42 60.9 0.96 TaAffx.53324.1.S1_x_at CA693604 - - 9e+0 At4g09070 - O.I. H.G. S.X.
0.36 51.9 0.96 Ta.18072.1.S1_at CA628068 - - 2e+0 At1g79260 unknown protein O.I. H.G. S.X.
0.29 39.2 0.96 Ta.494.1.S1_at CK155824 - - 5e-30 At1g02560 CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5) O.I. H.G. S.X.
0.25 32.1 0.96 Ta.1517.1.S1_at CA629173 porphobilinogen deaminase - 1e-5 At5g08280 HEMC (HYDROXYMETHYLBILANE SYNTHASE) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
34.6 99.9 GSM324487 Si- B+ rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
23.1 99.8 GSM324488 Si- B+ rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
8.3 98.8 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.1 98.8 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.6 98.3 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6 97.0 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3 96.7 GSM324489 Si- B+ rep3 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.3 96.7 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1 96.4 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5 95.4 GSM324492 Si+ B- rep3 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

Inter-species module comparison

A co-expression module including the maize gene, Zm.6422.1.A1_at, orthologous to the query gene, Ta.12083.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 85.8 Zm.6422.1.A1_at At5g17470 INDETERMINATE-related protein 1 - 5e+0 At3g11280 myb family transcription factor O.I. H.G. S.X.
0.65 82.1 Zm.720.1.A1_at At5g17470 hypothetical protein LOC100273239 - 2e+0 At4g23870 unknown protein O.I. H.G. S.X.
0.60 77.8 Zm.5275.1.A1_at At5g17470 hypothetical protein LOC100192527 - 5e-9 At1g13640 phosphatidylinositol 3- and 4-kinase family protein O.I. H.G. S.X.
0.59 76.1 Zm.8584.1.A1_at At5g17470 - - 4e+0 At2g31430 invertase/pectin methylesterase inhibitor family protein O.I. H.G. S.X.
0.48 61.3 Zm.8233.3.S1_a_at At5g17470 hypothetical protein LOC100194283 /// splicing factor, arginine/serine-rich 7 - 5e-7 At4g31580 SRZ-22 O.I. H.G. S.X.
0.45 56.4 Zm.5578.2.S1_a_at At5g17470 hypothetical protein LOC100193656 - 1e-4 At5g48335 unknown protein O.I. H.G. S.X.
0.44 55.7 Zm.8232.1.A1_at At5g17470 hypothetical protein LOC100191804 - 4e-1 At1g02405 proline-rich family protein O.I. H.G. S.X.
0.42 51.3 Zm.730.2.A1_a_at At5g17470 hypothetical protein LOC100191862 /// hypothetical protein LOC100193447 - 8e-31 At3g46440 UXS5 O.I. H.G. S.X.
0.42 51.3 Zm.8850.1.A1_at At5g17470 hypothetical protein LOC100272618 - 4e-2 At3g17940 aldose 1-epimerase family protein O.I. H.G. S.X.
0.41 49.7 Zm.5142.1.A1_at At5g17470 hypothetical protein LOC100274396 - 1e-7 At2g47020 peptide chain release factor, putative O.I. H.G. S.X.
0.40 48.5 Zm.13249.2.A1_at At5g17470 - - 1e+0 At1g35255 unknown protein O.I. H.G. S.X.
0.40 48.5 Zm.6804.2.A1_at At5g17470 hypothetical protein LOC100217058 - 1e-38 At1g29310 P-P-bond-hydrolysis-driven protein transmembrane transporter O.I. H.G. S.X.
0.40 48.5 ZmAffx.963.1.A1_s_at At5g17470 hypothetical protein LOC100272453 - 8e-1 At4g04620 ATG8B (autophagy 8b) O.I. H.G. S.X.
0.39 45.6 Zm.18516.1.A1_x_at At5g17470 - - 2e+0 At5g55570 unknown protein O.I. H.G. S.X.
0.38 44.2 Zm.13385.1.A1_at At5g17470 hypothetical LOC542461 - 8e-1 At1g21864 - O.I. H.G. S.X.
0.35 38.9 Zm.10456.1.S1_at At5g17470 hypothetical protein LOC100277504 - 8e+0 At2g21880 ATRAB7A O.I. H.G. S.X.
0.33 36.0 Zm.17638.1.S1_at At5g17470 - - 5e+0 At5g44460 calcium-binding protein, putative O.I. H.G. S.X.
0.32 33.4 Zm.14689.1.S1_at At5g17470 hypothetical protein LOC100277287 - 7e-7 At2g43180 catalytic O.I. H.G. S.X.
0.28 28.1 Zm.13669.1.S1_x_at At5g17470 - - 2e-1 At3g26420 ATRZ-1A O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera

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