Co-expression analysis

Gene ID	Ta.12083.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g17470: calmodulin-related protein, putative (HF=1e+0)
Module size	6 genes
NF	0.45
%ile	70.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.96	Ta.12083.1.A1_at	CD885615	-	-	1e+0	At5g17470	calmodulin-related protein, putative	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.97	Ta.25402.1.S1_at	CK160504	-	-	4e-42	At1g11430	plastid developmental protein DAG, putative	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.96	TaAffx.53324.1.S1_x_at	CA693604	-	-	9e+0	At4g09070	-	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.96	Ta.18072.1.S1_at	CA628068	-	-	2e+0	At1g79260	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.96	Ta.494.1.S1_at	CK155824	-	-	5e-30	At1g02560	CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.96	Ta.1517.1.S1_at	CA629173	porphobilinogen deaminase	-	1e-5	At5g08280	HEMC (HYDROXYMETHYLBILANE SYNTHASE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
34.6	99.9	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
23.1	99.8	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
8.3	98.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.1	98.8	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.6	98.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6	97.0	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM324489	Si- B+ rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.3	96.7	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM324492	Si+ B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

Inter-species module comparison

A co-expression module including the grape gene, 1618319_at, orthologous to the query gene, Ta.12083.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	92.6	1618319_at	At5g17470	-	-	4e+0	At3g60670	zinc-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.72	89.7	1618576_at	At5g17470	pectate lyase PL1-like	-	4e-124	At4g13710	pectate lyase family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	1621708_at	At5g17470	hypothetical LOC100247368	-	9e-5	At1g73750	-	O.I.	H.G.	S.X.	Please select
0.67	87.9	1610428_at	At5g17470	hypothetical protein LOC100263040	-	2e-4	At1g32090	early-responsive to dehydration protein-related / ERD protein-related	O.I.	H.G.	S.X.	Please select
0.63	84.3	1607883_at	At5g17470	hypothetical protein LOC100255480	-	5e+0	At5g49215	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	1609429_at	At5g17470	hypothetical protein LOC100255607	-	7e-9	At4g25433	peptidoglycan-binding LysM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	1609181_at	At5g17470	hypothetical protein LOC100246904	-	3e-1	At3g51420	SSL4 (STRICTOSIDINE SYNTHASE-LIKE 4)	O.I.	H.G.	S.X.	Please select
0.58	79.8	1622096_at	At5g17470	hypothetical protein LOC100243077	-	4e+0	At3g21490	copper-binding family protein	O.I.	H.G.	S.X.	Please select
0.58	79.8	1619862_at	At5g17470	hypothetical protein LOC100251016	-	3e-1	At4g32470	ubiquinol-cytochrome C reductase complex 14 kDa protein, putative	O.I.	H.G.	S.X.	Please select
0.55	77.3	1621490_at	At5g17470	hypothetical protein LOC100256024	-	4e-3	At5g48350	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.53	75.2	1616147_at	At5g17470	hypothetical protein LOC100243192	-	2e-6	At2g26800	hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative	O.I.	H.G.	S.X.	Please select
0.52	73.9	1615630_at	At5g17470	hypothetical protein LOC100250058	-	4e-1	At1g26930	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.51	73.2	1606482_at	At5g17470	hypothetical protein LOC100243077	-	3e-10	At3g44830	lecithin:cholesterol acyltransferase family protein / LACT family protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	1611979_at	At5g17470	hypothetical protein LOC100251016	-	1e-31	At4g19120	ERD3 (early-responsive to dehydration 3)	O.I.	H.G.	S.X.	Please select
0.46	66.5	1608955_at	At5g17470	hypothetical protein LOC100254904	-	6e-2	At4g28570	alcohol oxidase-related	O.I.	H.G.	S.X.	Please select
0.44	64.1	1620050_at	At5g17470	hypothetical protein LOC100244027	-	1e-5	At5g17500	glycosyl hydrolase family 5 protein / cellulase family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	1618401_at	At5g17470	hypothetical protein LOC100255480	-	6e-19	At2g47010	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	1607967_at	At5g17470	hypothetical protein LOC100261140	-	4e-1	At3g24860	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1618256_at	At5g17470	hypothetical protein LOC100249006 /// hypothetical protein LOC100246355	-	4e+0	At5g20240	PI (PISTILLATA)	O.I.	H.G.	S.X.	Please select
0.38	53.6	1618595_at	At5g17470	hypothetical protein LOC100248440	-	5e-1	At4g10950	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	1614297_at	At5g17470	hypothetical protein LOC100264651	-	2e-6	At4g32000	protein kinase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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