Co-expression analysis

Gene ID	Ta.12083.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g17470: calmodulin-related protein, putative (HF=1e+0)
Module size	6 genes
NF	0.45
%ile	70.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.96	Ta.12083.1.A1_at	CD885615	-	-	1e+0	At5g17470	calmodulin-related protein, putative	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.97	Ta.25402.1.S1_at	CK160504	-	-	4e-42	At1g11430	plastid developmental protein DAG, putative	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.96	TaAffx.53324.1.S1_x_at	CA693604	-	-	9e+0	At4g09070	-	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.96	Ta.18072.1.S1_at	CA628068	-	-	2e+0	At1g79260	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.96	Ta.494.1.S1_at	CK155824	-	-	5e-30	At1g02560	CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.96	Ta.1517.1.S1_at	CA629173	porphobilinogen deaminase	-	1e-5	At5g08280	HEMC (HYDROXYMETHYLBILANE SYNTHASE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
34.6	99.9	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
23.1	99.8	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
8.3	98.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.1	98.8	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.6	98.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6	97.0	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM324489	Si- B+ rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.3	96.7	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM324492	Si+ B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

Inter-species module comparison

A co-expression module including the barley gene, Contig17073_at, orthologous to the query gene, Ta.12083.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.52	68.3	Contig17073_at	At5g17470	-	-	2e+0	At5g17470	calmodulin-related protein, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig8779_at	At5g17470	-	-	1e+1	At5g05930	guanylyl cyclase-related (GC1)	O.I.	H.G.	S.X.	Please select
0.61	78.7	HM10K10r_at	At5g17470	-	-	2e-2	At3g10185	-	O.I.	H.G.	S.X.	Please select
0.48	63.2	Contig2878_at	At5g17470	-	-	4e-1	At3g49630	2-oxoacid-dependent oxidase, putative	O.I.	H.G.	S.X.	Please select
0.44	58.9	HF11O19r_at	At5g17470	-	-	8e-5	At3g25140	QUA1 (QUASIMODO 1)	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig11552_at	At5g17470	-	-	1e-13	At2g35700	ERF38 (ERF FAMILY PROTEIN 38)	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig8778_s_at	At5g17470	-	-	2e-2	At3g10185	-	O.I.	H.G.	S.X.	Please select
0.39	50.5	HV_CEb0011B08r2_at	At5g17470	-	-	4e+0	At3g61880	CYP78A9 (CYTOCHROME P450 78A9)	O.I.	H.G.	S.X.	Please select
0.37	47.9	Contig10370_at	At5g17470	-	-	2e-12	At1g34370	STOP1 (sensitive to proton rhizotoxicity 1)	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig19673_at	At5g17470	-	-	4e-23	At1g79580	SMB (SOMBRERO)	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig8487_at	At5g17470	-	-	8e-6	At1g28490	SYP61 (SYNTAXIN OF PLANTS 61)	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig3301_s_at	At5g17470	-	-	7e-1	At1g08660	glycosyl transferase family 29 protein / sialyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig4809_at	At5g17470	-	-	9e-2	At1g64370	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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