Co-expression analysis

Gene ID	Ta.11895.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g25280: AtTLP10 (TUBBY LIKE PROTEIN 10) (HF=4e-6)
Module size	6 genes
NF	0.64
%ile	88.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	0.97	Ta.11895.1.S1_at	BQ171007	-	-	4e-6	At1g25280	AtTLP10 (TUBBY LIKE PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.98	TaAffx.84352.1.S1_at	CA638782	-	-	5e-43	At3g61650	TUBG1 (GAMMA-TUBULIN)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.98	Ta.4932.3.S1_x_at	BJ319726	-	-	4e-28	At5g22330	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.97	TaAffx.98307.1.S1_at	CA649031	-	-	7e-2	At4g36950	MAPKKK21	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.97	Ta.9770.1.S1_at	BJ230730	-	-	6e+0	At5g19940	plastid-lipid associated protein PAP-related / fibrillin-related	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.98	Ta.4932.1.A1_a_at	BJ274109	-	-	8e-2	At1g12890	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
27.6	99.8	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
23.1	99.8	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
16.7	99.6	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
16.1	99.6	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
11.5	99.3	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
11.4	99.3	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
5.2	97.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
2.9	94.0	GSM298059	Crown tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the grape gene, 1620298_at, orthologous to the query gene, Ta.11895.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	95.1	1620298_at	At1g25280	hypothetical protein LOC100253937	-	1e-18	At1g47270	AtTLP6 (TUBBY LIKE PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.51	73.2	1615467_at	At1g25280	hypothetical protein LOC100245445	-	1e-13	At1g75700	HVA22G (HVA22-LIKE PROTEIN G)	O.I.	H.G.	S.X.	Please select
0.48	68.8	1608070_at	At1g25280	hypothetical protein LOC100245501	-	1e+0	At4g10880	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	1613050_at	At1g25280	hypothetical protein LOC100248215	-	5e-4	At1g20470	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1618990_at	At1g25280	hypothetical protein LOC100243216	-	2e-1	At5g62880	ARAC10	O.I.	H.G.	S.X.	Please select
0.41	58.7	1612852_at	At1g25280	hypothetical protein LOC100243284	-	5e-76	At5g62890	permease, putative	O.I.	H.G.	S.X.	Please select
0.41	58.7	1614963_at	At1g25280	hypothetical protein LOC100266167	-	8e-12	At1g01950	armadillo/beta-catenin repeat family protein / kinesin motor family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	1609772_at	At1g25280	hypothetical protein LOC100246247	-	3e-1	At3g56880	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1615797_at	At1g25280	hypothetical protein LOC100256435	-	9e-27	At5g41310	kinesin motor protein-related	O.I.	H.G.	S.X.	Please select
0.34	46.8	1617390_at	At1g25280	-	-	2e+0	At5g20100	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	1609398_at	At1g25280	hypothetical protein LOC100261736	-	3e-66	At5g23860	TUB8	O.I.	H.G.	S.X.	Please select
0.31	41.3	1614917_at	At1g25280	hypothetical protein LOC100267340	-	4e+0	At5g60660	PIP2	O.I.	H.G.	S.X.	Please select
0.29	37.7	1606646_at	At1g25280	hypothetical protein LOC100264115	-	2e-23	At5g09870	CESA5 (CELLULOSE SYNTHASE 5)	O.I.	H.G.	S.X.	Please select
0.29	37.7	1606978_s_at	At1g25280	hypothetical protein LOC100242245	-	5e-1	At1g16680	DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative	O.I.	H.G.	S.X.	Please select
0.27	34.0	1615115_at	At1g25280	hypothetical protein LOC100244778	-	1e-38	At5g05080	UBC22 (ubiquitin-conjugating enzyme 22)	O.I.	H.G.	S.X.	Please select
0.21	24.0	1609466_at	At1g25280	hypothetical protein LOC100262838	-	3e-61	At5g65270	AtRABA4a (Arabidopsis Rab GTPase homolog A4a)	O.I.	H.G.	S.X.	Please select
0.19	20.9	1620765_at	At1g25280	hypothetical protein LOC100266143	-	2e-124	At1g20090	ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2)	O.I.	H.G.	S.X.	Please select
0.07	7.8	1615754_at	At1g25280	-	-	3e-41	At5g65470	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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