Co-expression analysis

Gene ID	Ta.11895.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g25280: AtTLP10 (TUBBY LIKE PROTEIN 10) (HF=4e-6)
Module size	6 genes
NF	0.64
%ile	88.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	0.97	Ta.11895.1.S1_at	BQ171007	-	-	4e-6	At1g25280	AtTLP10 (TUBBY LIKE PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.98	TaAffx.84352.1.S1_at	CA638782	-	-	5e-43	At3g61650	TUBG1 (GAMMA-TUBULIN)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.98	Ta.4932.3.S1_x_at	BJ319726	-	-	4e-28	At5g22330	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.97	TaAffx.98307.1.S1_at	CA649031	-	-	7e-2	At4g36950	MAPKKK21	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.97	Ta.9770.1.S1_at	BJ230730	-	-	6e+0	At5g19940	plastid-lipid associated protein PAP-related / fibrillin-related	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.98	Ta.4932.1.A1_a_at	BJ274109	-	-	8e-2	At1g12890	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
27.6	99.8	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
23.1	99.8	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
16.7	99.6	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
16.1	99.6	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
11.5	99.3	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
11.4	99.3	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
5.2	97.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
2.9	94.0	GSM298059	Crown tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the barley gene, Contig8590_at, orthologous to the query gene, Ta.11895.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	58.9	Contig8590_at	At1g25280	-	-	5e-9	At2g18280	AtTLP2 (TUBBY LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig14516_at	At1g25280	glutathione synthetase	-	3e-2	At5g27380	GSH2 (GLUTATHIONE SYNTHETASE 2)	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig20397_at	At1g25280	-	-	2e-3	At1g53420	serine/threonine protein kinase-related	O.I.	H.G.	S.X.	Please select
0.21	22.6	HZ65L19r_at	At1g25280	-	-	8e-1	At3g25860	LTA2	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig12718_at	At1g25280	-	-	1e-1	At2g44590	ADL1D (ARABIDOPSIS DYNAMIN-RELATED PROTEIN 1D)	O.I.	H.G.	S.X.	Please select
0.11	9.4	Contig18306_at	At1g25280	-	-	8e-2	At3g49270	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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