Co-expression analysis

Gene ID	Ta.11895.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g25280: AtTLP10 (TUBBY LIKE PROTEIN 10) (HF=4e-6)
Module size	6 genes
NF	0.64
%ile	88.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	0.97	Ta.11895.1.S1_at	BQ171007	-	-	4e-6	At1g25280	AtTLP10 (TUBBY LIKE PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.98	TaAffx.84352.1.S1_at	CA638782	-	-	5e-43	At3g61650	TUBG1 (GAMMA-TUBULIN)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.98	Ta.4932.3.S1_x_at	BJ319726	-	-	4e-28	At5g22330	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.97	TaAffx.98307.1.S1_at	CA649031	-	-	7e-2	At4g36950	MAPKKK21	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.97	Ta.9770.1.S1_at	BJ230730	-	-	6e+0	At5g19940	plastid-lipid associated protein PAP-related / fibrillin-related	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.98	Ta.4932.1.A1_a_at	BJ274109	-	-	8e-2	At1g12890	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
27.6	99.8	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
23.1	99.8	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
16.7	99.6	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
16.1	99.6	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
11.5	99.3	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
11.4	99.3	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
5.2	97.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
2.9	94.0	GSM298059	Crown tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the soybean gene, Gma.8676.1.S1_at, orthologous to the query gene, Ta.11895.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.58	78.8	Gma.8676.1.S1_at	At1g25280	-	-	4e-15	At2g18280	AtTLP2 (TUBBY LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.51	72.3	GmaAffx.54969.2.S1_s_at	At1g25280	-	-	4e-25	At2g16700	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	O.I.	H.G.	S.X.	Please select
0.45	63.9	GmaAffx.39699.2.S1_at	At1g25280	-	-	2e-7	At3g02880	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.43	60.6	Gma.10757.1.S1_at	At1g25280	-	-	2e-4	At3g16920	chitinase	O.I.	H.G.	S.X.	Please select
0.39	54.5	Gma.17624.1.S1_at	At1g25280	-	-	4e+0	At4g15660	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.7364.1.S1_at	At1g25280	-	-	6e-23	At2g28840	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.90341.1.S1_at	At1g25280	endo-1,4-beta-glucancase precursor	-	1e-46	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	O.I.	H.G.	S.X.	Please select
0.34	47.2	Gma.16587.2.S1_a_at	At1g25280	endo-1,4-beta-glucancase precursor	-	5e-30	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.16452.1.S1_at	At1g25280	-	-	6e+0	At5g57500	transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.31203.1.S1_at	At1g25280	-	-	6e-6	At1g51630	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.0	Gma.378.1.S1_at	At1g25280	-	-	2e-22	At2g42610	LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)	O.I.	H.G.	S.X.	Please select
0.27	35.7	Gma.607.1.S1_at	At1g25280	-	-	3e-2	At5g36940	CAT3 (CATIONIC AMINO ACID TRANSPORTER 3)	O.I.	H.G.	S.X.	Please select
0.25	32.6	GmaAffx.91310.1.S1_s_at	At1g25280	endo-1,4-beta-glucancase precursor	-	9e-17	At4g24260	ATGH9A3 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A3)	O.I.	H.G.	S.X.	Please select
0.24	30.9	GmaAffx.78411.1.S1_at	At1g25280	-	-	1e-9	At1g19170	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.	Please select
0.20	25.1	GmaAffx.91000.1.S1_s_at	At1g25280	-	-	9e-54	At2g45960	PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B)	O.I.	H.G.	S.X.	Please select
0.19	23.7	GmaAffx.14740.1.S1_at	At1g25280	-	-	9e-1	At1g28200	FIP1 (FH INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.18	22.3	GmaAffx.80120.1.S1_at	At1g25280	-	-	3e-1	At1g16640	transcriptional factor B3 family protein	O.I.	H.G.	S.X.	Please select
0.18	22.3	Gma.7158.1.A1_at	At1g25280	-	-	3e-8	At2g28250	NCRK	O.I.	H.G.	S.X.	Please select
0.17	21.2	GmaAffx.66293.2.S1_at	At1g25280	-	-	2e-2	At3g07900	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	16.3	GmaAffx.86631.1.S1_at	At1g25280	-	-	1e+1	At3g63020	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage