Co-expression analysis

Gene ID	Ta.11888.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g17556: unknown protein (HF=4e+0)
Module size	9 genes
NF	0.13
%ile	26.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	93.6	0.90	Ta.11888.2.S1_at	BQ170995	-	-	4e+0	At2g17556	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.94	Ta.22826.1.S1_s_at	CA596064	-	-	7e-2	At4g25225	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.96	Ta.14016.1.S1_x_at	AJ611802	-	-	3e-4	At4g25225	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.93	Ta.20894.1.A1_at	CA640912	-	-	3e-2	At5g66560	phototropic-responsive NPH3 family protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.95	Ta.13365.1.S1_a_at	BQ578488	-	-	6e-1	At1g47970	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.96	Ta.11240.1.A1_at	BJ237562	-	-	1e+0	At3g27160	GHS1 (GLUCOSE HYPERSENSITIVE 1)	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.92	Ta.13985.1.S1_at	BQ788572	-	-	2e+1	At5g22555	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.92	Ta.11888.1.S1_at	CA597261	-	-	4e+1	At5g22210	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.94	Ta.18982.1.S1_at	CA628383	-	-	2e+0	At1g58100	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.1	99.7	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
14.5	99.5	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
8.4	98.9	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.8	98.7	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.8	98.4	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
6.5	98.3	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.0	98.0	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.8	97.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.7	97.9	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.5	96.9	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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