Co-expression analysis

Gene ID	Ta.11732.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g29120: unknown protein (HF=8e-2)
Module size	38 genes
NF	0.29
%ile	47.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.3	0.93	Ta.11732.1.A1_at	BQ170698	-	-	8e-2	At1g29120	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.95	Ta.15813.1.S1_at	CA497008	-	-	5e+0	At4g03280	PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C)	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.95	Ta.15960.1.S1_at	CA502466	-	-	1e+0	At2g01340	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.96	TaAffx.50804.2.S1_s_at	CA735112	-	-	9e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.95	Ta.27512.1.S1_at	BT009204.1	-	-	2e+0	At3g42310	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.96	Ta.30570.1.A1_at	BJ263950	-	-	4e+0	At5g20150	SPX1 (SPX DOMAIN GENE 1)	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.95	Ta.10305.1.A1_at	BE516999	-	-	6e+0	At5g45775	60S ribosomal protein L11 (RPL11D)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.94	Ta.14847.1.A1_at	BJ322176	-	-	2e+1	At5g16450	dimethylmenaquinone methyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.95	TaAffx.33907.1.S1_at	AJ609988	-	-	8e+0	At5g03270	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.95	Ta.8921.1.A1_at	BQ162637	-	-	3e+0	At1g04230	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.95	TaAffx.36860.1.A1_at	BJ311154	-	-	1e+0	At2g34470	UREG (UREASE ACCESSORY PROTEIN G)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.96	Ta.1689.1.S1_at	BE443816	-	-	1e+0	At4g04620	ATG8B (autophagy 8b)	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.95	TaAffx.63731.1.A1_at	BQ237417	-	-	5e+0	At5g52150	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.96	Ta.11601.1.A1_at	BQ170431	-	-	3e+0	At3g17460	PHD finger family protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.94	Ta.4492.1.S1_at	BJ267134	-	-	7e-9	At1g34260	phosphatidylinositol-4-phosphate 5-kinase family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.94	Ta.25314.2.A1_at	BJ276422	-	-	4e+0	At5g18130	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.95	Ta.8708.1.A1_at	BQ162257	-	-	3e+0	At2g14692	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.95	Ta.25954.1.S1_at	CD454784	-	-	4e-1	At4g22680	MYB85 (myb domain protein 85)	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.96	Ta.11969.1.A1_a_at	CK208221	-	-	5e+0	At5g58500	LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.96	Ta.11750.1.S1_at	BQ170727	-	-	7e+0	At5g66260	auxin-responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.96	Ta.11046.1.A1_at	BQ168437	-	-	8e-1	At5g08190	NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12)	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.95	Ta.4701.1.S1_at	BJ270288	-	-	6e+0	At3g43270	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.96	Ta.7222.1.A1_at	BJ322973	-	-	3e-5	At2g45830	DTA2 (DOWNSTREAM TARGET OF AGL15 2)	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.94	Ta.4887.1.A1_at	BJ273349	-	-	1e+0	At4g12950	-	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.96	TaAffx.38601.1.A1_at	BJ216440	-	-	7e-2	At4g11960	PGRL1B (PGR5-Like B)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.95	Ta.25317.2.A1_a_at	BJ265394	-	-	4e+0	At2g20625	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.94	Ta.469.1.S1_at	BE445064	-	-	3e-19	At1g08720	EDR1 (ENHANCED DISEASE RESISTANCE 1)	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.96	Ta.30553.1.S1_s_at	CD918711	-	-	6e-4	At2g44950	HUB1 (HISTONE MONO-UBIQUITINATION 1)	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.96	Ta.3543.1.A1_at	BJ220370	-	-	3e-1	At2g17785	zinc-binding protein-related	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.96	Ta.974.1.S1_at	BE516580	-	-	2e+0	At1g74200	AtRLP16 (Receptor Like Protein 16)	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.96	Ta.26025.1.A1_at	CD454728	-	-	8e-2	At2g33510	protein binding	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.96	Ta.18143.1.A1_at	BJ230756	-	-	1e+0	At1g30230	elongation factor 1-beta / EF-1-beta	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.95	Ta.25976.1.A1_at	CD454100	-	-	3e-1	At5g46700	TRN2 (TORNADO 2)	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.94	Ta.5411.2.A1_at	CK200725	-	-	2e+0	At5g60290	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.96	TaAffx.37134.1.A1_s_at	BG906112	-	-	5e+0	At2g06530	VPS2.1	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.96	Ta.9253.1.S1_at	CK197206	-	-	7e-5	At1g30470	SIT4 phosphatase-associated family protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.95	TaAffx.113522.1.S1_at	CA610339	-	-	4e+0	At5g18470	curculin-like (mannose-binding) lectin family protein	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.95	Ta.8162.2.S1_at	BQ171109	-	-	1e-27	At2g41020	WW domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.5	98.3	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.3	98.2	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.5	97.8	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.4	97.7	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.0	97.4	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.7	97.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
3.7	95.8	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.5	95.4	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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