Co-expression analysis

Gene ID	Ta.11296.3.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At1g77200: AP2 domain-containing transcription factor TINY, putative (HF=1e+0)
Module size	24 genes
NF	0.43
%ile	68.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.5	0.92	Ta.11296.3.S1_x_at	CA659571	-	-	1e+0	At1g77200	AP2 domain-containing transcription factor TINY, putative	O.I.	H.G.	S.X.	Please select
0.65	83.9	0.92	Ta.26484.1.A1_at	CD491002	-	-	4e-26	At2g02560	CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED)	O.I.	H.G.	S.X.	Please select
0.54	75.5	0.93	TaAffx.65456.2.S1_at	BJ245420	-	-	1e+0	At2g14660	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	75.5	0.94	Ta.8956.1.A1_at	BQ162686	-	-	3e+0	At3g31350	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.95	TaAffx.80426.1.S1_at	CA600418	-	-	4e-1	At2g12935	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.92	TaAffx.117130.1.S1_at	BQ609707	-	-	3e-1	At5g21910	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.92	TaAffx.16156.1.A1_at	CD492191	-	-	2e+1	At5g02960	40S ribosomal protein S23 (RPS23B)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.93	TaAffx.560.3.S1_at	CA741730	-	-	4e+0	At3g57930	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.93	Ta.20821.1.S1_at	CA619240	-	-	8e-10	At1g13440	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.93	Ta.25516.1.S1_x_at	CD885585	-	-	2e-1	At5g39800	60S ribosomal protein-related	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.92	TaAffx.80608.1.S1_at	CA694804	-	-	1e+0	At5g30495	-	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.95	TaAffx.119601.1.S1_at	BJ266980	-	-	9e+0	At5g59950	RNA and export factor-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.94	TaAffx.117373.1.S1_at	BQ605838	-	-	1e+0	At3g10400	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.95	TaAffx.55930.1.S1_at	CA659349	-	-	6e+0	At5g63240	glycosyl hydrolase family protein 17	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.95	TaAffx.107511.1.S1_at	CA632217	-	-	2e+1	At5g57980	RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.94	Ta.26694.1.A1_at	CD491598	-	-	1e+0	At3g09280	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.94	TaAffx.92350.1.S1_at	BJ269587	-	-	1e+0	At5g47306	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.95	Ta.16180.1.A1_at	BJ322793	-	-	1e+0	At1g03410	2A6	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.95	TaAffx.26470.1.S1_at	CA688638	-	-	4e+0	At4g21610	LOL2 (LSD ONE LIKE 2)	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.93	TaAffx.111613.1.S1_at	CA636910	-	-	9e-1	At3g57670	NTT (NO TRANSMITTING TRACT)	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.95	TaAffx.105451.1.S1_at	CA734135	-	-	1e+0	At3g06730	thioredoxin family protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.94	TaAffx.6386.1.S1_at	CA686854	-	-	2e+1	At4g14440	HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.94	Ta.3501.3.A1_at	CA658638	-	-	3e-1	At5g08330	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.94	TaAffx.117156.3.S1_at	CA709106	-	-	9e-1	At5g48575	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.8	98.9	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.5	98.6	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
5.7	97.9	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.5	97.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4	97.7	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6	97.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
3.4	95.2	GSM139923	Anther telophaseI-telophaseII rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.4	95.2	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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