Co-expression analysis

Gene ID	Ta.10760.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g70310: SPDS2 (spermidine synthase 2) (HF=5e-1)
Module size	6 genes
NF	0.26
%ile	42.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.93	Ta.10760.1.S1_at	BQ806324	-	-	5e-1	At1g70310	SPDS2 (spermidine synthase 2)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.95	Ta.27950.1.S1_at	CD923913	-	-	4e+0	At3g09590	pathogenesis-related protein, putative	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.97	Ta.28535.1.S1_at	BJ289039	-	-	1e+0	At5g55135	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.98	Ta.13396.2.S1_at	BJ287941	-	-	3e+0	At2g15050	LTP	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.98	Ta.5760.1.S1_at	CD922076	-	-	2e+0	At5g55135	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.98	Ta.28848.1.S1_at	BQ579494	-	-	4e+0	At1g18970	GLP4 (GERMIN-LIKE PROTEIN 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.9	99.7	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
10.3	99.2	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
9.8	99.1	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
9.2	99.0	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
8.6	98.9	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
8.3	98.8	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
7.0	98.5	GSM250906	TcLr34_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM250912	TcLr34_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.5	95.4	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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