Co-expression analysis

Gene ID Ta.10709.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At5g35640: - (HF=1e+1)
Module size 6 genes
NF 0.25
%ile 40.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4260.90.86Ta.10709.1.A1_atAW448456--1e+1At5g35640-O.I.H.G.S.X.
0.3346.90.85Ta.20429.1.S1_atCK197611phenylalanine ammonia-lyase-2e+0At2g37040pal1 (Phe ammonia lyase 1)O.I.H.G.S.X.
0.2430.30.86Ta.18630.1.A1_atCK211309--5e+0At3g10920MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1)O.I.H.G.S.X.
0.2024.00.89Ta.27788.1.S1_x_atCK200801--8e+0At5g40690-O.I.H.G.S.X.
0.1719.80.87Ta.18630.1.A1_x_atCK211309--5e+0At3g10920MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1)O.I.H.G.S.X.
0.1517.10.87Ta.27788.2.S1_a_atCA717752--3e-1At3g55470C2 domain-containing proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.399.5GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
10.999.3GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
9.599.1GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
6.998.4GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
6.298.1GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
5.097.4GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.496.8GSM138200genotype F48 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
4.496.8GSM138154genotype H5 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
4.096.3GSM139927Anther tetrads rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.896.0GSM138169genotype B68 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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