CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.10688.1.S1_at

Gene name indole synthase
Homology with Arabidopsis Similar to At4g02610: tryptophan synthase, alpha subunit, putative (HF=3e-3)

Module size 6 genes

NF 0.78

%ile 96.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.94 Ta.10688.1.S1_at AB094060.1 indole synthase - 3e-3 At4g02610 tryptophan synthase, alpha subunit, putative O.I. H.G. S.X.
0.80 92.2 0.89 Ta.21388.1.S1_at CA675057 - - 1e+1 At5g64810 WRKY51 O.I. H.G. S.X.
0.80 92.2 0.93 TaAffx.99036.1.A1_at CK211911 - - 5e+0 At1g23040 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.67 86.3 0.98 Ta.3380.1.S1_at AB042629.1 - - 2e-2 At2g36026 - O.I. H.G. S.X.
0.61 82.0 0.94 Ta.3381.1.S1_at AF123602.1 - - 9e-1 At4g31940 CYP82C4 O.I. H.G. S.X.
0.59 79.8 0.89 Ta.1362.1.S1_at AB042631.1 - - 1e-2 At5g25130 CYP71B12 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
40.0 99.9 GSM314252 tissue type: germinating seed, coleoptile - rep2 GSE12508 Transcription patterns during wheat development
29.5 99.8 GSM314251 tissue type: germinating seed, coleoptile - rep1 GSE12508 Transcription patterns during wheat development
13.7 99.5 GSM314253 tissue type: germinating seed, coleoptile - rep3 GSE12508 Transcription patterns during wheat development
12.2 99.4 GSM314257 tissue type: germinating seed, embryo - rep1 GSE12508 Transcription patterns during wheat development
11.9 99.4 GSM314258 tissue type: germinating seed, embryo - rep2 GSE12508 Transcription patterns during wheat development
10.7 99.2 GSM314259 tissue type: germinating seed, embryo - rep3 GSE12508 Transcription patterns during wheat development
4.2 96.6 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
4.0 96.3 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9 94.0 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
2.6 92.9 GSM143491 Jupateco_Lr34 (resistant), mock inoculated basal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the rice gene, Os03g0797400, orthologous to the query gene, Ta.10688.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.95 99.6 Os03g0797400 At4g02610 - Tryptophan synthase, alpha chain domain containingprotein 4e-2 At5g66090 unknown protein O.I. H.G. S.X.
0.26 25.6 Os05g0582800 At4g02610 - Peptidase S10, serine carboxypeptidase familyprotein 3e+0 At1g15000 scpl50 (serine carboxypeptidase-like 50) O.I. H.G. S.X.
0.24 22.4 Os03g0736900 At4g02610 - Conserved hypothetical protein 2e+0 At5g23100 unknown protein O.I. H.G. S.X.
0.16 11.3 Os01g0655500 At4g02610 - Protein kinase domain containing protein 1e-10 At5g53450 ORG1 (OBP3-responsive gene 1) O.I. H.G. S.X.
0.14 9.3 Os02g0634700 At4g02610 - Serine carboxypeptidase II-1 precursor (EC3.4.16.6) (CP-MII.1) (Fragment) 3e-16 At5g23210 SCPL34 O.I. H.G. S.X.
0.13 8.2 Os09g0401300 At4g02610 - ZIM domain containing protein 4e-3 At1g70700 TIFY7 O.I. H.G. S.X.
0.13 8.2 Os08g0105800 At4g02610 - E-class P450, group I family protein 7e-5 At3g44250 CYP71B38 O.I. H.G. S.X.
0.12 7.2 Os01g0851100 At4g02610 - Axi 1 (Auxin-independent growth promoter)-likeprotein 3e-14 At3g54100 unknown protein O.I. H.G. S.X.
0.09 4.9 Os01g0749400 At4g02610 - Glycosyl transferase, family 20 domain containingprotein 2e-12 At1g06410 ATTPS7 O.I. H.G. S.X.
0.09 4.9 Os01g0338600 At4g02610 - Conserved hypothetical protein 6e-29 At2g43945 unknown protein O.I. H.G. S.X.
0.08 4.2 Os04g0585200 At4g02610 - Glutamate receptor 3.3 precursor (Ligand-gated ionchannel 3.3) 4e-7 At4g35290 GLUR2 (GLUTAMATE RECEPTOR 2) O.I. H.G. S.X.
0.08 4.2 Os02g0668100 At4g02610 - Polyprenyl synthetase family protein 2e-1 At4g18620 - O.I. H.G. S.X.
0.07 3.7 Os04g0623300 At4g02610 - Flavin-containing amine oxidase family protein 2e-18 At2g43020 ATPAO2 (Polyamine oxidase 2) O.I. H.G. S.X.
0.07 3.7 Os01g0629400 At4g02610 - NLI interacting factor domain containing protein 5e-3 At5g11860 NLI interacting factor (NIF) family protein O.I. H.G. S.X.
0.04 2.0 Os01g0495900 At4g02610 - Protein of unknown function UPF0044 family protein 2e-8 At2g20020 CAF1 O.I. H.G. S.X.
0.04 2.0 Os04g0456700 At4g02610 - Lipoxygenase, LH2 domain containing protein 3e-2 At1g72210 basic helix-loop-helix (bHLH) family protein (bHLH096) O.I. H.G. S.X.
0.04 2.0 Os04g0558400 At4g02610 - Acyl-CoA thioesterase family protein 6e-5 At4g00520 - O.I. H.G. S.X.
0.03 1.4 Os01g0123900 At4g02610 - Bowman-Birk type proteinase inhibitor (EBI) 2e-3 At4g30662 unknown protein O.I. H.G. S.X.
0.03 1.4 Os02g0630300 At4g02610 - 2OG-Fe(II) oxygenase domain containing protein 4e-3 At1g06650 2-oxoglutarate-dependent dioxygenase, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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