Co-expression analysis

Gene ID	Ta.10688.1.S1_at
Gene name	indole synthase
Homology with Arabidopsis	Similar to At4g02610: tryptophan synthase, alpha subunit, putative (HF=3e-3)
Module size	6 genes
NF	0.78
%ile	96.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.94	Ta.10688.1.S1_at	AB094060.1	indole synthase	-	3e-3	At4g02610	tryptophan synthase, alpha subunit, putative	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.89	Ta.21388.1.S1_at	CA675057	-	-	1e+1	At5g64810	WRKY51	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.93	TaAffx.99036.1.A1_at	CK211911	-	-	5e+0	At1g23040	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.98	Ta.3380.1.S1_at	AB042629.1	-	-	2e-2	At2g36026	-	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.94	Ta.3381.1.S1_at	AF123602.1	-	-	9e-1	At4g31940	CYP82C4	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.89	Ta.1362.1.S1_at	AB042631.1	-	-	1e-2	At5g25130	CYP71B12	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
40.0	99.9	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
29.5	99.8	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
13.7	99.5	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
12.2	99.4	GSM314257	tissue type: germinating seed, embryo - rep1	GSE12508	Transcription patterns during wheat development
11.9	99.4	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
10.7	99.2	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
4.2	96.6	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.6	92.9	GSM143491	Jupateco_Lr34 (resistant), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the soybean gene, Gma.6127.1.S1_at, orthologous to the query gene, Ta.10688.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	Gma.6127.1.S1_at	At4g02610	tryptophan synthase alpha subunit	-	6e-22	At4g02610	tryptophan synthase, alpha subunit, putative	O.I.	H.G.	S.X.	Please select
0.20	25.1	Gma.10674.1.S1_s_at	At4g02610	-	-	4e-17	At2g34160	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.19	23.7	Gma.6806.2.S1_a_at	At4g02610	-	-	9e-13	At3g05230	signal peptidase subunit family protein	O.I.	H.G.	S.X.	Please select
0.12	15.1	Gma.2015.2.S1_a_at	At4g02610	-	-	2e-3	At1g62820	calmodulin, putative	O.I.	H.G.	S.X.	Please select
0.08	11.0	Gma.6428.1.S1_at	At4g02610	-	-	4e-26	At1g05350	thiF family protein	O.I.	H.G.	S.X.	Please select
0.04	7.0	Gma.1449.1.S1_s_at	At4g02610	nucleoside diphosphate kinase	-	5e-41	At4g09320	NDPK1	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage