CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.10688.1.S1_at

Gene name indole synthase
Homology with Arabidopsis Similar to At4g02610: tryptophan synthase, alpha subunit, putative (HF=3e-3)

Module size 6 genes

NF 0.78

%ile 96.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.94 Ta.10688.1.S1_at AB094060.1 indole synthase - 3e-3 At4g02610 tryptophan synthase, alpha subunit, putative O.I. H.G. S.X.
0.80 92.2 0.89 Ta.21388.1.S1_at CA675057 - - 1e+1 At5g64810 WRKY51 O.I. H.G. S.X.
0.80 92.2 0.93 TaAffx.99036.1.A1_at CK211911 - - 5e+0 At1g23040 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.67 86.3 0.98 Ta.3380.1.S1_at AB042629.1 - - 2e-2 At2g36026 - O.I. H.G. S.X.
0.61 82.0 0.94 Ta.3381.1.S1_at AF123602.1 - - 9e-1 At4g31940 CYP82C4 O.I. H.G. S.X.
0.59 79.8 0.89 Ta.1362.1.S1_at AB042631.1 - - 1e-2 At5g25130 CYP71B12 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
40.0 99.9 GSM314252 tissue type: germinating seed, coleoptile - rep2 GSE12508 Transcription patterns during wheat development
29.5 99.8 GSM314251 tissue type: germinating seed, coleoptile - rep1 GSE12508 Transcription patterns during wheat development
13.7 99.5 GSM314253 tissue type: germinating seed, coleoptile - rep3 GSE12508 Transcription patterns during wheat development
12.2 99.4 GSM314257 tissue type: germinating seed, embryo - rep1 GSE12508 Transcription patterns during wheat development
11.9 99.4 GSM314258 tissue type: germinating seed, embryo - rep2 GSE12508 Transcription patterns during wheat development
10.7 99.2 GSM314259 tissue type: germinating seed, embryo - rep3 GSE12508 Transcription patterns during wheat development
4.2 96.6 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
4.0 96.3 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9 94.0 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
2.6 92.9 GSM143491 Jupateco_Lr34 (resistant), mock inoculated basal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g02610, orthologous to the query gene, Ta.10688.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.50 65.3 At4g02610 828226 tryptophan synthase, alpha subunit, putative F:tryptophan synthase activity;P:tryptophan biosynthetic process;C:chloroplast;BOAFPM O.I. H.G. S.X.
0.67 81.6 At5g06240 830511 emb2735 (embryo defective 2735) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P O.I. H.G. S.X.
0.38 46.7 At5g58240 835936 bis(5'-adenosyl)-triphosphatase, putative Encodes a Fhit protein. Has nucleoside phosphoramidase and adenylylsulfatase activities. O.I. H.G. S.X.
0.33 38.1 At5g55160 835609 SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2) Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. SUMO2 can form SUMO chains through lysine residue 10 during in vitro assays. O.I. H.G. S.X.
0.29 30.3 At3g52090 824372 NRPB11 Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB11 and the E. oli RNA polymerase alpha subunit. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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