Co-expression analysis

Gene ID Ta.10688.1.S1_at
Gene name indole synthase
Homology with ArabidopsisSimilar to At4g02610: tryptophan synthase, alpha subunit, putative (HF=3e-3)
Module size 6 genes
NF 0.78
%ile 96.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.94Ta.10688.1.S1_atAB094060.1indole synthase-3e-3At4g02610tryptophan synthase, alpha subunit, putativeO.I.H.G.S.X.
0.8092.20.89Ta.21388.1.S1_atCA675057--1e+1At5g64810WRKY51O.I.H.G.S.X.
0.8092.20.93TaAffx.99036.1.A1_atCK211911--5e+0At1g23040hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.6786.30.98Ta.3380.1.S1_atAB042629.1--2e-2At2g36026-O.I.H.G.S.X.
0.6182.00.94Ta.3381.1.S1_atAF123602.1--9e-1At4g31940CYP82C4O.I.H.G.S.X.
0.5979.80.89Ta.1362.1.S1_atAB042631.1--1e-2At5g25130CYP71B12O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
40.099.9GSM314252tissue type: germinating seed, coleoptile - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
29.599.8GSM314251tissue type: germinating seed, coleoptile - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
13.799.5GSM314253tissue type: germinating seed, coleoptile - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
12.299.4GSM314257tissue type: germinating seed, embryo - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
11.999.4GSM314258tissue type: germinating seed, embryo - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
10.799.2GSM314259tissue type: germinating seed, embryo - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.296.6GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.096.3GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.994.0GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.692.9GSM143491Jupateco_Lr34 (resistant), mock inoculated basal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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