Co-expression analysis

Gene ID	Ta.10648.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At4g30470: cinnamoyl-CoA reductase-related (HF=2e-1)
Module size	6 genes
NF	0.48
%ile	74.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.94	Ta.10648.1.S1_x_at	BQ166184	-	-	2e-1	At4g30470	cinnamoyl-CoA reductase-related	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.93	Ta.26042.1.S1_at	CA608417	-	-	2e+0	At3g60260	phagocytosis and cell motility protein ELMO1-related	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.92	Ta.27917.1.A1_at	CD897727	-	-	2e+1	At5g56940	ribosomal protein S16 family protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.92	Ta.4536.1.A1_at	BJ274005	-	-	1e-12	At4g32140	-	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.93	Ta.3487.3.S1_x_at	CA659295	-	-	7e-8	At1g72080	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.94	Ta.9817.1.S1_at	BJ232472	-	-	4e+0	At5g46115	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.9	99.5	GSM111208	genotype F36 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
9.8	99.1	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
8.0	98.8	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
7.5	98.6	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
7.4	98.6	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.4	98.2	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
6.3	98.2	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
6.0	98.0	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.0	97.4	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.5	95.4	GSM111223	genotype H5 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage