Co-expression analysis

Gene ID	Ta.10520.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g29780: unknown protein (HF=2e-2)
Module size	6 genes
NF	0.67
%ile	91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.95	Ta.10520.1.S1_at	AL828817	-	-	2e-2	At4g29780	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.96	Ta.7143.1.S1_x_at	BJ316053	-	-	2e+1	At5g60840	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.96	Ta.7143.2.S1_x_at	CK192888	-	-	2e+1	At5g19380	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.96	Ta.7143.1.S1_a_at	BJ316053	-	-	2e+1	At5g60840	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.95	Ta.9239.1.A1_x_at	CD937104	-	-	2e+1	At5g06210	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.95	Ta.9239.1.A1_at	CD937104	-	-	2e+1	At5g06210	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.8	99.1	GSM138169	genotype B68 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
8.6	98.9	GSM138184	genotype C25 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
7.5	98.6	GSM111236	genotype F38b developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
7.1	98.5	GSM138200	genotype F48 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.7	98.4	GSM138195	genotype J15 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.5	98.3	GSM138188	genotype F38a developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.8	97.9	GSM138154	genotype H5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.7	97.9	GSM138199	genotype C22 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.6	97.8	GSM138153	genotype G32 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.7	97.1	GSM138136	Genotype Domain developing seed at 5 days after anthesis, biological rep1 location SB	GSE5937	Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location

Inter-species module comparison

A co-expression module including the maize gene, Zm.11770.1.A1_at, orthologous to the query gene, Ta.10520.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	Zm.11770.1.A1_at	At4g29780	hypothetical protein LOC100191551	-	9e-5	At5g12010	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.18005.1.A1_at	At4g29780	hypothetical protein LOC100275925	-	2e+0	At1g69760	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.18364.1.S1_at	At4g29780	hypothetical protein LOC100279528	-	6e-2	At1g66890	-	O.I.	H.G.	S.X.	Please select
0.18	11.6	Zm.15550.1.S1_a_at	At4g29780	hypothetical protein LOC100191653 /// protein phosphatase 2C	-	5e-9	At5g66080	protein phosphatase 2C family protein / PP2C family protein	O.I.	H.G.	S.X.	Please select
0.11	5.3	Zm.10069.1.A1_at	At4g29780	-	-	4e+0	At5g03460	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	4.6	Zm.5274.1.S1_at	At4g29780	triose phosphate/phosphate translocator, non-green plastid,chloroplast	-	4e-18	At5g33320	CUE1 (CAB UNDEREXPRESSED 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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