Co-expression analysis

Gene ID Ta.10498.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g07590: small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative (HF=2e+0)
Module size 20 genes
NF 0.32
%ile 52.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8393.40.89Ta.10498.2.S1_atCA739299--2e+0At3g07590small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeO.I.H.G.S.X.
0.4869.00.94Ta.4369.1.S1_atBJ219411--2e-4At1g16610SR45O.I.H.G.S.X.
0.4767.90.92Ta.23980.1.A1_atCA722187--5e+1At5g50801unknown proteinO.I.H.G.S.X.
0.4666.80.92Ta.5388.2.S1_s_atBJ280873--5e+0At5g52610F-box family proteinO.I.H.G.S.X.
0.4464.50.94TaAffx.111590.1.S1_atCA637180--1e+0At1g01990-O.I.H.G.S.X.
0.3448.10.94TaAffx.6631.1.S1_atCA681291--2e+1At5g41090anac095 (Arabidopsis NAC domain containing protein 95)O.I.H.G.S.X.
0.3346.90.94TaAffx.55874.1.S1_atCA660028--1e+1At4g32680unknown proteinO.I.H.G.S.X.
0.3244.40.92TaAffx.4687.1.S1_atCA734719--1e+0At1g20470auxin-responsive family proteinO.I.H.G.S.X.
0.2939.20.95TaAffx.79010.1.S1_atCA723804--3e+0At4g31470pathogenesis-related protein, putativeO.I.H.G.S.X.
0.2735.60.95TaAffx.117156.3.S1_atCA709106--9e-1At5g48575unknown proteinO.I.H.G.S.X.
0.2633.60.95Ta.3501.3.A1_atCA658638--3e-1At5g08330TCP family transcription factor, putativeO.I.H.G.S.X.
0.2633.60.93Ta.13700.1.S1_atCA486450--5e-50At5g53300UBC10 (ubiquitin-conjugating enzyme 10)O.I.H.G.S.X.
0.2633.60.94TaAffx.35493.1.S1_atBQ606743--4e+0At5g07460PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)O.I.H.G.S.X.
0.2430.30.94TaAffx.78855.1.S1_atCA725651--5e-2At1g49930-O.I.H.G.S.X.
0.2227.10.94TaAffx.65565.2.S1_atBJ232957--3e-1At3g04370PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4)O.I.H.G.S.X.
0.2227.10.95TaAffx.80426.1.S1_atCA600418--4e-1At2g12935unknown proteinO.I.H.G.S.X.
0.2125.50.94TaAffx.58573.1.S1_atCA618425--2e-11At3g62250UBQ5 (ubiquitin 5)O.I.H.G.S.X.
0.1922.40.94Ta.19671.1.S1_atCA655723--2e+1At5g11440CID5O.I.H.G.S.X.
0.1821.00.94TaAffx.107511.1.S1_atCA632217--2e+1At5g57980RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)O.I.H.G.S.X.
0.1719.80.93Ta.11247.2.A1_atBQ169698--8e+0At5g51890peroxidaseO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.498.9GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
7.598.6GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
6.598.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.098.0GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
5.697.8GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.097.4GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.997.3GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.997.3GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.897.2GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.697.0GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage