Co-expression analysis

Gene ID	Ta.10440.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g10780: - (HF=1e+0)
Module size	6 genes
NF	0.35
%ile	57.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	0.91	Ta.10440.2.S1_at	BJ247141	-	-	1e+0	At5g10780	-	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.93	TaAffx.58364.1.S1_at	CA620231	-	-	2e+1	At4g10610	CID12	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.92	TaAffx.108984.1.S1_at	CA681537	-	-	4e+0	At4g35070	-	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.92	TaAffx.112188.1.S1_at	CA625505	-	-	2e+1	At4g38092	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.91	Ta.19055.1.A1_at	CK205684	-	-	8e-23	At4g22130	SRF8 (STRUBBELIG-RECEPTOR FAMILY 8)	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.91	TaAffx.27716.1.S1_x_at	CA671981	-	-	1e+0	At5g13870	EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
57.5	99.9	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
7.8	98.7	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.7	98.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.9	98.0	GSM246386	SB169_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
5.8	97.9	GSM246391	SB62_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
5.0	97.4	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
4.9	97.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.7	97.1	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM246390	SB62_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
3.5	95.4	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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