Co-expression analysis

Gene ID	Ta.10408.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g10470: ARR4 (RESPONSE REGULATOR 4) (HF=2e-10)
Module size	6 genes
NF	0.14
%ile	27.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.90	Ta.10408.1.S1_at	CN009026	-	-	2e-10	At1g10470	ARR4 (RESPONSE REGULATOR 4)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.91	Ta.11777.1.S1_x_at	BQ620561	-	-	5e-1	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.89	Ta.1909.1.A1_at	BE446796	-	-	5e-2	At3g55390	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.89	TaAffx.119928.1.A1_s_at	BJ251441	-	-	4e-2	At1g14900	HMGA (HIGH MOBILITY GROUP A)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.86	Ta.11777.2.S1_at	CA701022	-	-	3e-1	At5g62720	integral membrane HPP family protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.86	Ta.1630.2.S1_at	CA668027	-	-	2e+0	At3g14850	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.9	99.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
8.0	98.8	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.8	97.9	GSM246397	SB57_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
4.7	97.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM298081	Leaf tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM298091	Leaf tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.7	95.8	GSM324490	Si+ B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.5	95.4	GSM324493	Si+ B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.4	95.2	GSM111208	genotype F36 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.4	95.2	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.213255.1.S1_s_at, orthologous to the query gene, Ta.10408.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	PtpAffx.213255.1.S1_s_at	At1g10470	type-a response regulator	-	3e-37	At2g41310	ATRR3 (RESPONSE REGULATOR 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.200622.1.S1_x_at	At1g10470	hypothetical protein	-	1e-1	At4g34730	ribosome-binding factor A family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.54186.1.S1_at	At1g10470	histidine phosphotransfer protein	-	5e-7	At3g21510	AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.212800.1.S1_at	At1g10470	hypothetical protein	-	1e-4	At4g24670	TAR2 (TRYPTOPHAN AMINOTRANSFERASE RELATED 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.225061.1.S1_s_at	At1g10470	hypothetical protein	-	6e-33	At5g11380	DXPS3 (1-deoxy-D-xylulose 5-phosphate synthase 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.5701.2.S1_at	At1g10470	-	-	2e-3	At4g25800	calmodulin-binding protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	Ptp.4615.1.S1_at	At1g10470	hypothetical protein	-	2e-21	At1g53730	SRF6 (STRUBBELIG-RECEPTOR FAMILY 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.132467.1.S1_s_at	At1g10470	hypothetical protein	-	6e-61	At5g28840	GME (GDP-D-MANNOSE 3',5'-EPIMERASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.223632.1.S1_s_at	At1g10470	hypothetical protein	-	7e-26	At4g18905	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	Ptp.5775.1.S1_at	At1g10470	hypothetical protein	-	3e-21	At5g62070	IQD23 (IQ-domain 23)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.20200.1.S1_at	At1g10470	hypothetical protein	-	2e-4	At1g69450	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.117432.1.S1_at	At1g10470	hypothetical protein	-	3e-8	At3g12160	RABA4D (RAB GTPASE HOMOLOG A4D)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.222305.1.S1_s_at	At1g10470	hypothetical protein	-	7e-1	At4g08190	Ras-related GTP-binding protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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