CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.10408.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g10470: ARR4 (RESPONSE REGULATOR 4) (HF=2e-10)

Module size 6 genes

NF 0.14

%ile 27.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 86.3 0.90 Ta.10408.1.S1_at CN009026 - - 2e-10 At1g10470 ARR4 (RESPONSE REGULATOR 4) O.I. H.G. S.X.
0.67 86.3 0.91 Ta.11777.1.S1_x_at BQ620561 - - 5e-1 At3g49430 SRp34a (Ser/Arg-rich protein 34a) O.I. H.G. S.X.
0.60 81.0 0.89 Ta.1909.1.A1_at BE446796 - - 5e-2 At3g55390 integral membrane family protein O.I. H.G. S.X.
0.55 76.8 0.89 TaAffx.119928.1.A1_s_at BJ251441 - - 4e-2 At1g14900 HMGA (HIGH MOBILITY GROUP A) O.I. H.G. S.X.
0.50 72.4 0.86 Ta.11777.2.S1_at CA701022 - - 3e-1 At5g62720 integral membrane HPP family protein O.I. H.G. S.X.
0.03 4.7 0.86 Ta.1630.2.S1_at CA668027 - - 2e+0 At3g14850 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.9 99.4 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
8.0 98.8 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.8 97.9 GSM246397 SB57_Stem_ rep2_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
4.7 97.1 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
4.3 96.7 GSM298081 Leaf tissue of Solstice at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.8 96.0 GSM298091 Leaf tissue of Solstice at 9 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.7 95.8 GSM324490 Si+ B- rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.5 95.4 GSM324493 Si+ B+ rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.4 95.2 GSM111208 genotype F36 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.4 95.2 GSM324491 Si+ B- rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

Inter-species module comparison

A co-expression module including the rice gene, Os11g0143300, orthologous to the query gene, Ta.10408.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 Os11g0143300 At1g10470 - - 5e-7 At3g57040 ARR9 (RESPONSE REGULATOR 9) O.I. H.G. S.X.
0.50 68.0 Os01g0952500 At1g10470 - Two-component response regulator ARR9 (Responsereactor 4) 9e-7 At3g57040 ARR9 (RESPONSE REGULATOR 9) O.I. H.G. S.X.
0.25 24.1 Os04g0673300 At1g10470 - ZmRR2 protein (Response regulator 2) 8e-3 At5g19090 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.02 1.0 Os09g0509100 At1g10470 - No apical meristem (NAM) protein domain containingprotein 2e-1 At4g18692 unknown protein O.I. H.G. S.X.
0.02 1.0 Os06g0702700 At1g10470 - AIG2-like family protein 3e-5 At4g31310 avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related O.I. H.G. S.X.
0.02 1.0 Os08g0530300 At1g10470 - Exo70 exocyst complex subunit family protein 7e-5 At3g51290 proline-rich family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage