Co-expression analysis

Gene ID	Ta.10390.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g35350: XCP1 (XYLEM CYSTEINE PEPTIDASE 1) (HF=5e-5)
Module size	6 genes
NF	0.41
%ile	65.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	74.9	0.87	Ta.10390.1.S1_at	CK168322	-	-	5e-5	At4g35350	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	Ta.10390.2.A1_x_at	BJ242559	-	-	2e+1	Atcg00730	-	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	Ta.10390.2.A1_a_at	BJ242559	-	-	2e+1	Atcg00730	-	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.92	Ta.11161.1.A1_at	BQ169532	-	-	2e+0	At4g08360	KOW domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.93	TaAffx.40189.1.S1_at	AJ613550	-	-	5e-1	At3g23680	F-box family protein-related	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.92	Ta.28600.2.S1_a_at	CA720107	-	-	1e-7	At3g45010	scpl48 (serine carboxypeptidase-like 48)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.0	98.8	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
7.2	98.5	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
6.8	98.4	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
5.7	97.9	GSM138200	genotype F48 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.6	97.8	GSM111230	genotype B33 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.1	96.4	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
4.0	96.3	GSM111209	genotype F36 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.0	96.3	GSM138154	genotype H5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.9	96.1	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.224610.1.S1_at, orthologous to the query gene, Ta.10390.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	73.7	PtpAffx.224610.1.S1_at	At4g35350	hypothetical protein	-	2e-6	At5g50260	cysteine proteinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.121678.1.A1_at	At4g35350	BOP/NPR1/NIM1-like regulatory protein	-	3e+0	At4g01510	ARV2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.204528.1.S1_at	At4g35350	hypothetical protein	-	5e-1	At5g17720	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.211544.1.S1_at	At4g35350	hypothetical protein	-	5e-1	At3g61390	U-box domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.204167.1.S1_at	At4g35350	-	-	9e-3	At1g69040	ACR4 (ACT REPEAT 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.37675.1.A1_at	At4g35350	-	-	2e+0	At3g06895	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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