CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.10390.1.S1_at

Gene name
Homology with Arabidopsis Similar to At4g35350: XCP1 (XYLEM CYSTEINE PEPTIDASE 1) (HF=5e-5)

Module size 6 genes

NF 0.41

%ile 65.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 74.9 0.87 Ta.10390.1.S1_at CK168322 - - 5e-5 At4g35350 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) O.I. H.G. S.X.
0.50 72.4 0.96 Ta.10390.2.A1_x_at BJ242559 - - 2e+1 Atcg00730 - O.I. H.G. S.X.
0.50 72.4 0.96 Ta.10390.2.A1_a_at BJ242559 - - 2e+1 Atcg00730 - O.I. H.G. S.X.
0.40 58.4 0.92 Ta.11161.1.A1_at BQ169532 - - 2e+0 At4g08360 KOW domain-containing protein O.I. H.G. S.X.
0.29 39.2 0.93 TaAffx.40189.1.S1_at AJ613550 - - 5e-1 At3g23680 F-box family protein-related O.I. H.G. S.X.
0.20 24.0 0.92 Ta.28600.2.S1_a_at CA720107 - - 1e-7 At3g45010 scpl48 (serine carboxypeptidase-like 48) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.0 98.8 GSM314276 tissue type: pistil, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
7.2 98.5 GSM314277 tissue type: pistil, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
6.8 98.4 GSM314275 tissue type: pistil, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
5.7 97.9 GSM138200 genotype F48 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.6 97.8 GSM111230 genotype B33 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
4.1 96.4 GSM314273 tissue type: floral bracts, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
4.0 96.3 GSM111209 genotype F36 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
4.0 96.3 GSM138154 genotype H5 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.9 96.1 GSM314280 tissue type: anthers, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
3.9 96.1 GSM314272 tissue type: floral bracts, before anthesis - rep1 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the rice gene, Os08g0556900, orthologous to the query gene, Ta.10390.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 Os08g0556900 At4g35350 - Cysteine proteinase (EC 3.4.22.-) 1e-2 At5g50260 cysteine proteinase, putative O.I. H.G. S.X.
0.83 95.8 Os03g0370400 At4g35350 - Protein of unknown function DUF679 family protein 1e-1 At5g27370 unknown protein O.I. H.G. S.X.
0.60 79.7 Os11g0134700 At4g35350 - Latex-abundant protein 3e+0 At3g06790 plastid developmental protein DAG, putative O.I. H.G. S.X.
0.50 68.0 Os02g0114200 At4g35350 - Serine carboxypeptidase III precursor (EC3.4.16.5) 3e-10 At3g45010 scpl48 (serine carboxypeptidase-like 48) O.I. H.G. S.X.
0.44 58.1 Os07g0679300 At4g35350 - Alpha-galactosidase precursor (EC 3.2.1.22)(Melibiase) (Alpha-D- galactoside galactohydrolase) 6e-54 At3g56310 alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative O.I. H.G. S.X.
0.12 7.2 Os04g0311400 At4g35350 - Cysteine proteinase 1 precursor (EC 3.4.22.-) 3e-13 At4g39090 RD19 (RESPONSIVE TO DEHYDRATION 19) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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