CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.10390.1.S1_at

Gene name
Homology with Arabidopsis Similar to At4g35350: XCP1 (XYLEM CYSTEINE PEPTIDASE 1) (HF=5e-5)

Module size 6 genes

NF 0.41

%ile 65.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 74.9 0.87 Ta.10390.1.S1_at CK168322 - - 5e-5 At4g35350 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) O.I. H.G. S.X.
0.50 72.4 0.96 Ta.10390.2.A1_x_at BJ242559 - - 2e+1 Atcg00730 - O.I. H.G. S.X.
0.50 72.4 0.96 Ta.10390.2.A1_a_at BJ242559 - - 2e+1 Atcg00730 - O.I. H.G. S.X.
0.40 58.4 0.92 Ta.11161.1.A1_at BQ169532 - - 2e+0 At4g08360 KOW domain-containing protein O.I. H.G. S.X.
0.29 39.2 0.93 TaAffx.40189.1.S1_at AJ613550 - - 5e-1 At3g23680 F-box family protein-related O.I. H.G. S.X.
0.20 24.0 0.92 Ta.28600.2.S1_a_at CA720107 - - 1e-7 At3g45010 scpl48 (serine carboxypeptidase-like 48) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.0 98.8 GSM314276 tissue type: pistil, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
7.2 98.5 GSM314277 tissue type: pistil, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
6.8 98.4 GSM314275 tissue type: pistil, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
5.7 97.9 GSM138200 genotype F48 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.6 97.8 GSM111230 genotype B33 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
4.1 96.4 GSM314273 tissue type: floral bracts, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
4.0 96.3 GSM111209 genotype F36 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
4.0 96.3 GSM138154 genotype H5 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.9 96.1 GSM314280 tissue type: anthers, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
3.9 96.1 GSM314272 tissue type: floral bracts, before anthesis - rep1 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g35350, orthologous to the query gene, Ta.10390.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At4g35350 829688 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) tracheary element vacuolar protein O.I. H.G. S.X.
0.86 93.1 At5g51890 835264 peroxidase encodes peroxidase involved in the lignification of tracheary elements (TE) in roots O.I. H.G. S.X.
0.83 91.4 At1g20850 838677 XCP2 (xylem cysteine peptidase 2) F:peptidase activity, cysteine-type peptidase activity;P:proteolysis, developmental programmed cell death;C:cell wall;MOPVBAF O.I. H.G. S.X.
0.81 90.4 At4g08160 826365 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein Encodes a putative glycosyl hydrolase family 10 protein (xylanase). O.I. H.G. S.X.
0.80 89.8 At1g58370 842206 RXF12 Encodes a protein with xylanase activity. O.I. H.G. S.X.
0.80 89.8 At5g07080 830599 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. H.G. S.X.
0.77 88.0 At5g03260 831887 LAC11 (laccase 11) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). O.I. H.G. S.X.
0.74 86.1 At1g47410 841146 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.73 85.5 At5g40020 833999 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:endomembrane system;PFMBO O.I. H.G. S.X.
0.71 84.2 At5g19870 832108 unknown protein F:unknown;P:unknown;C:endomembrane system;MP O.I. H.G. S.X.
0.71 84.2 At5g60720 836193 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBM O.I. H.G. S.X.
0.67 81.6 At5g01930 831699 (1-4)-beta-mannan endohydrolase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOA O.I. H.G. S.X.
0.65 79.6 At5g60020 836124 LAC17 (laccase 17) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). O.I. H.G. S.X.
0.64 78.9 At3g62160 825389 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. H.G. S.X.
0.61 76.7 At5g01360 830298 - F:unknown;P:unknown;C:unknown;PMF O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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