Co-expression analysis

Gene ID Ta.10334.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g08840: D-alanine--D-alanine ligase family (HF=2e-3)
Module size 7 genes
NF 0.07
%ile 17.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8694.10.87Ta.10334.1.A1_atBQ169618--2e-3At3g08840D-alanine--D-alanine ligase familyO.I.H.G.S.X.
0.2024.00.96Ta.10907.1.A1_atBJ221015--7e-1At1g35500unknown proteinO.I.H.G.S.X.
0.1618.20.96Ta.5980.1.S1_atBQ169159--2e-1At5g24890unknown proteinO.I.H.G.S.X.
0.1011.30.93Ta.8458.1.A1_atCD885931--1e-10At3g08840D-alanine--D-alanine ligase familyO.I.H.G.S.X.
0.1011.30.96TaAffx.38087.1.A1_atBJ250956--2e+0At1g33840unknown proteinO.I.H.G.S.X.
0.067.60.89TaAffx.118107.1.S1_atCD938116--1e-8At3g08840D-alanine--D-alanine ligase familyO.I.H.G.S.X.
0.023.60.93Ta.28524.1.A1_a_atBJ270925beta-1,3-glucanase-9e-1At3g54620BZIP25 (BASIC LEUCINE ZIPPER 25)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.296.6GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.795.8GSM139923Anther telophaseI-telophaseII rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.695.6GSM298069Leaf tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.994.0GSM298083Crown tissue of Solstice at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.994.0GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.692.9GSM138163genotype E5 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.492.0GSM139914Anther pre-meiosis rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
2.391.5GSM138171genotype C31 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.291.0GSM343682Wheat var. Kennedy_control_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
2.291.0GSM139922Anther telophaseI-telophaseII rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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