Co-expression analysis

Gene ID	Ta.10334.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g08840: D-alanine--D-alanine ligase family (HF=2e-3)
Module size	7 genes
NF	0.07
%ile	17.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	94.1	0.87	Ta.10334.1.A1_at	BQ169618	-	-	2e-3	At3g08840	D-alanine--D-alanine ligase family	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.96	Ta.10907.1.A1_at	BJ221015	-	-	7e-1	At1g35500	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.96	Ta.5980.1.S1_at	BQ169159	-	-	2e-1	At5g24890	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.93	Ta.8458.1.A1_at	CD885931	-	-	1e-10	At3g08840	D-alanine--D-alanine ligase family	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.96	TaAffx.38087.1.A1_at	BJ250956	-	-	2e+0	At1g33840	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.89	TaAffx.118107.1.S1_at	CD938116	-	-	1e-8	At3g08840	D-alanine--D-alanine ligase family	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.93	Ta.28524.1.A1_a_at	BJ270925	beta-1,3-glucanase	-	9e-1	At3g54620	BZIP25 (BASIC LEUCINE ZIPPER 25)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	96.6	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.7	95.8	GSM139923	Anther telophaseI-telophaseII rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.6	95.6	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.9	94.0	GSM298083	Crown tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.9	94.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.6	92.9	GSM138163	genotype E5 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.4	92.0	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.3	91.5	GSM138171	genotype C31 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.2	91.0	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
2.2	91.0	GSM139922	Anther telophaseI-telophaseII rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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