Co-expression analysis

Gene ID	Ta.10143.1.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At3g56900: aladin-related / adracalin-related (HF=4e-5)
Module size	19 genes
NF	0.29
%ile	47.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	94.4	0.97	Ta.10143.1.S1_a_at	CD892982	-	-	4e-5	At3g56900	aladin-related / adracalin-related	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.98	Ta.121.1.S1_at	U49387.1	adenylosuccinate synthetase	-	1e-15	At3g57610	ADSS (ADENYLOSUCCINATE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.98	Ta.12414.1.S1_at	BQ172285	-	-	2e-9	At5g23880	CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.98	Ta.14505.1.S1_at	CK211549	-	-	1e-23	At5g35530	40S ribosomal protein S3 (RPS3C)	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.98	Ta.13217.1.S1_at	BJ298994	-	-	7e-1	At5g59570	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.98	Ta.14416.2.A1_a_at	BJ271618	-	-	3e-4	At4g31180	aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.98	Ta.3584.1.S1_at	BQ161866	-	-	2e+0	At5g25102	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.98	Ta.3102.1.A1_at	BQ170880	-	-	2e+0	At5g67480	BT4 (BTB AND TAZ DOMAIN PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.98	Ta.2358.3.S1_x_at	CA627906	-	-	2e+0	At1g15385	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.98	Ta.7226.1.S1_at	BJ277021	-	-	2e-7	At5g27540	MIRO1 (Miro-related GTP-ase 1)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.98	Ta.2502.3.A1_at	BJ306224	HSP80-2	-	4e-75	At5g56010	HSP81-3	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.98	Ta.2358.3.S1_at	CA627906	-	-	2e+0	At1g15385	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.98	Ta.6487.1.A1_at	CA659409	-	-	1e-7	At3g01890	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.98	Ta.12395.1.S1_at	CK208181	-	-	2e-2	At5g15610	proteasome family protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.98	Ta.9520.2.A1_at	BJ229796	-	-	4e-4	At5g27640	TIF3B1 (TRANSLATION INITIATION FACTOR 3B1)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.98	Ta.6358.1.S1_at	CD874800	-	-	3e-5	At2g27100	SE (SERRATE)	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.98	Ta.6642.1.S1_a_at	BJ272560	-	-	1e-18	At3g61760	ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B)	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.97	Ta.4691.1.S1_at	BJ270140	-	-	5e+0	At3g60720	PDLP8 (PLASMODESMATA-LOCATED PROTEIN 8)	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.97	Ta.19453.1.S1_at	CA652007	-	-	8e-2	At3g23610	dual specificity protein phosphatase (DsPTP1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	97.0	GSM298091	Leaf tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.1	96.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.3	95.0	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.3	95.0	GSM139925	Anther tetrads rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.1	94.5	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.0	94.3	GSM139927	Anther tetrads rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.9	94.0	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.9	94.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.8	93.6	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage