CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.10089.3.S1_x_at

Gene name
Homology with Arabidopsis Similar to At5g20130: unknown protein (HF=3e+0)

Module size 6 genes

NF 0.07

%ile 18.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 89.1 0.95 Ta.10089.3.S1_x_at CA663398 - - 3e+0 At5g20130 unknown protein O.I. H.G. S.X.
0.55 76.8 0.95 Ta.10089.3.S1_a_at CA663398 - - 3e+0 At5g20130 unknown protein O.I. H.G. S.X.
0.50 72.4 0.97 Ta.10089.1.S1_x_at CK195398 - - 3e-7 At5g64440 AtFAAH (Arabidopsis thaliana fatty acid amide hydrolase) O.I. H.G. S.X.
0.07 8.6 0.96 Ta.9306.2.S1_x_at BE493280 - - 6e+0 At5g46870 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.03 4.7 0.95 Ta.12197.1.A1_at BQ801071 - - 5e+0 At3g48231 LCR48 (Low-molecular-weight cysteine-rich 48) O.I. H.G. S.X.
0.02 3.6 0.95 Ta.12676.1.S1_at CK162155 - - 6e-4 At2g43080 AT-P4H-1 (A. THALIANA P4H ISOFORM 1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.3 98.2 GSM314260 tissue type: seedling, root - rep1 GSE12508 Transcription patterns during wheat development
5.8 97.9 GSM298076 Crown tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.8 97.9 GSM314265 tissue type: seedling, crown - rep3 GSE12508 Transcription patterns during wheat development
4.6 97.0 GSM298073 Crown tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.6 97.0 GSM314264 tissue type: seedling, crown - rep2 GSE12508 Transcription patterns during wheat development
4.4 96.8 GSM298075 Crown tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.3 96.7 GSM314263 tissue type: seedling, crown - rep1 GSE12508 Transcription patterns during wheat development
4.3 96.7 GSM298094 Crown tissue of Solstice at 9 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.4 95.2 GSM298074 Crown tissue of Paragon at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.3 95.0 GSM298059 Crown tissue of Harnesk at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.4570.1.A1_at, orthologous to the query gene, Ta.10089.3.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 Ptp.4570.1.A1_at At5g20130 hypothetical protein - 4e-12 At5g11520 ASP3 (ASPARTATE AMINOTRANSFERASE 3) O.I. H.G. S.X.
0.40 67.0 PtpAffx.223244.1.S1_at At5g20130 - - 7e-32 At5g49950 embryogenesis-associated protein-related O.I. H.G. S.X.
0.33 57.5 PtpAffx.146058.1.A1_at At5g20130 f-box family protein - 8e-10 At5g62940 Dof-type zinc finger domain-containing protein O.I. H.G. S.X.
0.15 25.3 PtpAffx.157404.1.S1_at At5g20130 hypothetical protein - 3e-32 At4g37920 unknown protein O.I. H.G. S.X.
0.10 16.3 PtpAffx.224879.1.S1_at At5g20130 hypothetical protein - 5e-65 At4g01810 protein transport protein-related O.I. H.G. S.X.
0.05 8.3 PtpAffx.200194.1.S1_s_at At5g20130 hypothetical protein - 9e-24 At2g25220 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays

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