Co-expression analysis

Gene ID Ta.10089.3.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At5g20130: unknown protein (HF=3e+0)
Module size 6 genes
NF 0.07
%ile 18.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7389.10.95Ta.10089.3.S1_x_atCA663398--3e+0At5g20130unknown proteinO.I.H.G.S.X.
0.5576.80.95Ta.10089.3.S1_a_atCA663398--3e+0At5g20130unknown proteinO.I.H.G.S.X.
0.5072.40.97Ta.10089.1.S1_x_atCK195398--3e-7At5g64440AtFAAH (Arabidopsis thaliana fatty acid amide hydrolase)O.I.H.G.S.X.
0.078.60.96Ta.9306.2.S1_x_atBE493280--6e+0At5g46870RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.034.70.95Ta.12197.1.A1_atBQ801071--5e+0At3g48231LCR48 (Low-molecular-weight cysteine-rich 48)O.I.H.G.S.X.
0.023.60.95Ta.12676.1.S1_atCK162155--6e-4At2g43080AT-P4H-1 (A. THALIANA P4H ISOFORM 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.398.2GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
5.897.9GSM298076Crown tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.897.9GSM314265tissue type: seedling, crown - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.697.0GSM298073Crown tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.697.0GSM314264tissue type: seedling, crown - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.496.8GSM298075Crown tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.396.7GSM314263tissue type: seedling, crown - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.396.7GSM298094Crown tissue of Solstice at 9 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.495.2GSM298074Crown tissue of Paragon at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.395.0GSM298059Crown tissue of Harnesk at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig6456_s_at, orthologous to the query gene, Ta.10089.3.S1_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5369.7Contig6456_s_atAt5g20130--4e+0At3g16120dynein light chain, putativeO.I.H.G.S.X.
0.6178.7Contig13457_s_atAt5g20130--6e-9At4g01150unknown proteinO.I.H.G.S.X.
0.5066.9Contig5487_s_atAt5g20130--3e-1At5g65207unknown proteinO.I.H.G.S.X.
0.4356.4Contig4469_atAt5g20130--4e-63At1g14400UBC1 (UBIQUITIN CARRIER PROTEIN 1)O.I.H.G.S.X.
0.4053.1Contig11368_atAt5g20130--1e-28At1g16740ribosomal protein L20 family proteinO.I.H.G.S.X.
0.2326.1Contig6329_atAt5g20130--3e-31At2g40490HEME2O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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