Co-expression analysis

Gene ID	Ta.10089.3.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At5g20130: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.07
%ile	18.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.1	0.95	Ta.10089.3.S1_x_at	CA663398	-	-	3e+0	At5g20130	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.95	Ta.10089.3.S1_a_at	CA663398	-	-	3e+0	At5g20130	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	Ta.10089.1.S1_x_at	CK195398	-	-	3e-7	At5g64440	AtFAAH (Arabidopsis thaliana fatty acid amide hydrolase)	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.96	Ta.9306.2.S1_x_at	BE493280	-	-	6e+0	At5g46870	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.95	Ta.12197.1.A1_at	BQ801071	-	-	5e+0	At3g48231	LCR48 (Low-molecular-weight cysteine-rich 48)	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.95	Ta.12676.1.S1_at	CK162155	-	-	6e-4	At2g43080	AT-P4H-1 (A. THALIANA P4H ISOFORM 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	98.2	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
5.8	97.9	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.8	97.9	GSM314265	tissue type: seedling, crown - rep3	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM298073	Crown tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.6	97.0	GSM314264	tissue type: seedling, crown - rep2	GSE12508	Transcription patterns during wheat development
4.4	96.8	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM314263	tissue type: seedling, crown - rep1	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.4	95.2	GSM298074	Crown tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM298059	Crown tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.2965.1.S1_at, orthologous to the query gene, Ta.10089.3.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.8	GmaAffx.2965.1.S1_at	At5g20130	-	-	3e+0	At5g48175	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	78.8	GmaAffx.47891.1.S1_s_at	At5g20130	-	-	2e-4	At5g06860	PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.53	74.2	GmaAffx.92774.1.S1_at	At5g20130	-	-	2e-4	At5g06860	PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.52	73.1	GmaAffx.6991.1.S1_at	At5g20130	-	-	4e-1	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	O.I.	H.G.	S.X.	Please select
0.50	71.7	GmaAffx.57389.1.S1_at	At5g20130	-	-	6e-1	At1g21940	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.38008.1.S1_at	At5g20130	-	-	2e-1	At1g60640	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	Gma.5867.1.A1_s_at	At5g20130	-	-	3e+0	At5g48890	transcription factor	O.I.	H.G.	S.X.	Please select
0.37	51.7	GmaAffx.92921.1.S1_at	At5g20130	-	-	4e-1	At2g31790	UDP-glucoronosyl/UDP-glucosyl transferase family protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.7559.1.S1_s_at	At5g20130	-	-	1e-3	At2g41680	NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C)	O.I.	H.G.	S.X.	Please select
0.35	48.6	GmaAffx.68456.1.S1_at	At5g20130	-	-	4e-2	At1g66540	cytochrome P450, putative	O.I.	H.G.	S.X.	Please select
0.30	40.4	GmaAffx.781.1.S1_at	At5g20130	-	-	2e-2	At1g02100	leucine carboxyl methyltransferase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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