Co-expression analysis

Gene ID	Ta.10089.3.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At5g20130: unknown protein (HF=3e+0)
Module size	11 genes
NF	0.39
%ile	62.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.94	Ta.10089.3.S1_a_at	CA663398	-	-	3e+0	At5g20130	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.96	Ta.3036.3.S1_a_at	CA656850	-	-	2e-1	At5g46020	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.96	Ta.2804.3.S1_s_at	CA696158	-	-	3e-1	At1g18470	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	TaAffx.24603.1.S1_at	CA716223	-	-	1e-11	At5g57015	ckl12 (Casein Kinase I-like 12)	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.97	TaAffx.115997.3.S1_s_at	BQ608861	-	-	2e-2	At1g25375	metallo-beta-lactamase family protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.98	Ta.7585.2.S1_a_at	CA661364	-	-	2e-20	At4g08800	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	Ta.19204.2.S1_at	CA717149	-	-	3e-2	At4g34450	coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.96	Ta.13627.1.S1_at	CD882213	-	-	3e-9	At5g46860	VAM3	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.97	Ta.10089.2.S1_a_at	CA655290	-	-	4e+0	At5g48420	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.97	Ta.10089.1.S1_x_at	CK195398	-	-	3e-7	At5g64440	AtFAAH (Arabidopsis thaliana fatty acid amide hydrolase)	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.96	Ta.10703.3.S1_at	BJ315021	-	-	3e-1	At4g05260	ubiquitin family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.2	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
3.6	95.6	GSM138207	genotype B11 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.4	95.2	GSM138209	genotype H23 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.9	94.0	GSM111237	genotype F38b developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.8	93.6	GSM111181	genotype C31 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.6	92.9	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.6	92.9	GSM138199	genotype C22 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.4	92.0	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
2.4	92.0	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.3	91.5	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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