Co-expression analysis

Gene ID Ta.1005.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g20520: unknown protein (HF=9e-1)
Module size 6 genes
NF 0.04
%ile 11.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.77Ta.1005.1.S1_atBE405270--9e-1At1g20520unknown proteinO.I.H.G.S.X.
0.1415.80.89TaAffx.104944.1.S1_atCA742553--5e-1At5g39540-O.I.H.G.S.X.
0.034.70.89TaAffx.51121.1.S1_atCA730791--1e+1At5g26848unknown proteinO.I.H.G.S.X.
0.034.70.91TaAffx.85507.1.S1_s_atCA622147--3e+0At1g78300GRF2 (GENERAL REGULATORY FACTOR 2)O.I.H.G.S.X.
0.023.60.91TaAffx.4944.1.S1_atCA728034--4e+0At5g56230PRA1.G2 (PRENYLATED RAB ACCEPTOR 1.G2)O.I.H.G.S.X.
0.023.60.91Ta.5258.1.S1_atCK207008--2e-3At2g35780scpl26 (serine carboxypeptidase-like 26)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
48.799.9GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
6.798.4GSM138215genotype A77 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
6.698.3GSM138145Genotype RL4452 developing seed at 5 days after anthesis, biological rep3 location SBGSE5937Wheat expression level polymorphism study parental genotypes 2 biological reps from SB locationLink to GEO
6.498.2GSM138154genotype H5 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
6.098.0GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.497.7GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.197.5GSM138169genotype B68 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
4.396.7GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.996.1GSM138162genotype E5 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.896.0GSM138200genotype F48 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.6048.2.A1_at, orthologous to the query gene, Ta.1005.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8395.6Zm.6048.2.A1_atAt1g20520--6e-17At2g24360serine/threonine/tyrosine kinase, putativeO.I.H.G.S.X.
0.8395.6Zm.15233.1.A1_atAt1g20520--4e+0At3g11050ATFER2 (ferritin 2)O.I.H.G.S.X.
0.7792.1ZmAffx.1333.1.S1_s_atAt1g20520--5e-50Atcg01120-O.I.H.G.S.X.
0.6785.8ZmAffx.1331.1.S1_s_atAt1g20520--2e+0Atcg01300-O.I.H.G.S.X.
0.5065.7------O.I.H.G.S.X.
0.4048.5ZmAffx.82.1.S1_atAt1g20520--5e-2At4g11910-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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