Co-expression analysis

Gene ID	S0001100030D09F1_x_at
Gene name
Homology with Arabidopsis	Similar to At4g34180: cyclase family protein (HF=4e-2)
Module size	11 genes
NF	0.69
%ile	90.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.92	S0001100030D09F1_x_at	S0001100030D09F1	-	-	4e-2	At4g34180	cyclase family protein	O.I.	H.G.	S.X.	Please select
0.76	89.8	0.93	Contig6141_s_at	Contig6141	-	-	6e-1	At3g54560	HTA11	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.92	S0001100126A06F1_x_at	S0001100126A06F1	-	-	7e-4	At1g32900	starch synthase, putative	O.I.	H.G.	S.X.	Please select
0.74	89.1	0.96	Contig3654_s_at	Contig3654	-	-	2e-36	At3g20050	ATTCP-1	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.92	Contig9074_at	Contig9074	-	-	3e+0	At4g32950	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.93	Contig3652_at	Contig3652	-	-	3e+0	At1g44835	YbaK/prolyl-tRNA synthetase family protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.95	HY07K02u_at	HY07K02u	-	-	3e+0	At1g03730	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.95	Contig500_at	Contig500	-	-	4e-19	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.93	Contig10719_at	Contig10719	-	-	4e-1	At5g45580	transcription factor	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.95	Contig4909_at	Contig4909	-	-	6e-4	At1g04750	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.95	Contig5196_at	Contig5196	-	-	2e-24	At4g02120	CTP synthase, putative / UTP--ammonia ligase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
23.2	99.8	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
18.7	99.7	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
18.7	99.7	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
15.4	99.6	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
13.7	99.5	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.2	98.7	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.7	98.6	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.9	97.1	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.9	97.1	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.9	97.1	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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