Co-expression analysis

Gene ID	S0000800160G05F1_at
Gene name
Homology with Arabidopsis	Similar to At5g42070: unknown protein (HF=7e-1)
Module size	6 genes
NF	0.06
%ile	8.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.71	S0000800160G05F1_at	S0000800160G05F1	-	-	7e-1	At5g42070	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.94	Contig7109_at	Contig7109	-	-	1e-1	At2g45480	AtGRF9 (GROWTH-REGULATING FACTOR 9)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig6816_at	Contig6816	-	-	2e+0	At4g13640	UNE16 (unfertilized embryo sac 16)	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.94	Contig3810_at	Contig3810	-	-	3e-18	At1g09350	AtGolS3 (Arabidopsis thaliana galactinol synthase 3)	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.94	Contig10422_at	Contig10422	-	-	2e+0	At3g01327	-	O.I.	H.G.	S.X.	Please select
0.01	1.1	0.87	HVSMEf0007L15f_s_at	HVSMEf0007L15f	-	-	4e+0	At1g32600	F-box family protein-related	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.9	99.5	GSM398261	HS41-1_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
13.6	99.5	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.7	96.9	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.4	96.6	GSM363465	5 mM B(OH)3 treatment (5B) - rep3	GSE14521	Late response to boron toxicity in barley leaves
3.6	95.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3	94.6	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2	94.3	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
2.9	93.4	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.9	93.4	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
2.8	93.1	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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