Co-expression analysis

Gene ID	S0000800150H08F1_x_at
Gene name
Homology with Arabidopsis	Similar to At5g35530: 40S ribosomal protein S3 (RPS3C) (HF=9e-10)
Module size	6 genes
NF	0.53
%ile	74.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.90	S0000800150H08F1_x_at	S0000800150H08F1	-	-	9e-10	At5g35530	40S ribosomal protein S3 (RPS3C)	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.92	HU10G19u_x_at	HU10G19u	-	-	1e-1	At4g01150	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.92	HT12H07u_x_at	HT12H07u	-	-	8e+0	At5g64552	CPuORF22 (Conserved peptide upstream open reading frame 22)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.93	HT12E20u_s_at	HT12E20u	-	-	3e+0	At1g09660	KH domain-containing quaking protein, putative	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.92	HS08J06u_at	HS08J06u	-	-	9e-1	At5g19175	-	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.93	HA10M13u_x_at	HA10M13u	-	-	6e+0	At5g46980	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.6	99.2	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.5	97.6	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.8	97.0	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment
4.5	96.7	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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