Co-expression analysis

Gene ID S0000700055F11F1_at
Gene name
Homology with ArabidopsisSimilar to At4g24973: - (HF=9e+0)
Module size 6 genes
NF 0.11
%ile 14.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.82S0000700055F11F1_atS0000700055F11F1--9e+0At4g24973-O.I.H.G.S.X.
0.1919.60.94Contig5703_atContig5703beta-D-xylosidase-5e+0At1g78060glycosyl hydrolase family 3 proteinO.I.H.G.S.X.
0.1311.60.94HY10O14u_x_atHY10O14u--6e-2At2g47270transcription factor/ transcription regulatorO.I.H.G.S.X.
0.1210.40.95Contig4591_atContig4591--4e-2At4g22890PGR5-LIKE AO.I.H.G.S.X.
0.108.40.94Contig17513_atContig17513--4e-4At5g06600UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12)O.I.H.G.S.X.
0.032.60.92HV12N12u_atHV12N12u--7e-2At5g41200AGL75 (AGAMOUS-LIKE 75)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.198.4GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.897.8GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM16082619% SWC rep3GSE6990Barley drought stressLink to GEO
4.296.3GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
3.995.8GSM146376Maythorpe shoot Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.995.8GSM146377Maythorpe shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.895.7GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO
3.695.3GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage