Co-expression analysis

Gene ID S0000200015H08F1_at
Gene name
Homology with ArabidopsisSimilar to At1g18540: 60S ribosomal protein L6 (RPL6A) (HF=3e+0)
Module size 6 genes
NF 0.03
%ile 4.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.79S0000200015H08F1_atS0000200015H08F1--3e+0At1g1854060S ribosomal protein L6 (RPL6A)O.I.H.G.S.X.
0.043.40.88Contig6233_atContig6233--3e-8At5g08790ATAF2O.I.H.G.S.X.
0.043.40.93HF02K06r_atHF02K06r--2e-2At5g04610spermidine synthase-related / putrescine aminopropyltransferase-relatedO.I.H.G.S.X.
0.032.60.93HVSMEi0011P17r2_atHVSMEi0011P17r2--9e-2At4g02890UBQ14O.I.H.G.S.X.
0.021.80.92HO03I02S_atHO03I02S--3e+0At5g37850SOS4 (SALT OVERLY SENSITIVE 4)O.I.H.G.S.X.
0.011.10.92HA10E04r_x_atHA10E04r--3e+0Atmg01000-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.698.6GSM238420Endosperm 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.198.4GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.098.4GSM238422Endosperm 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.895.7GSM238423Endosperm 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM238425Endosperm 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
2.993.4GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.993.4GSM431550pathogen isolates: Polymyxa graminis - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
2.893.1GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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