Co-expression analysis

Gene ID	PtpAffx.99938.1.A1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g21810: DER2.1 (DERLIN-2.1) (HF=2e+0)
Module size	6 genes
NF	0.26
%ile	46.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	0.90	PtpAffx.99938.1.A1_s_at	BP937099	hypothetical protein	-	2e+0	At4g21810	DER2.1 (DERLIN-2.1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.90	Ptp.3607.1.S1_at	DN492774	hypothetical protein	-	6e-1	At1g68440	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.91	PtpAffx.158803.1.S1_at	CX179737	hypothetical protein	-	2e-6	At1g68440	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.88	PtpAffx.203374.1.S1_x_at	pmrna6714	hypothetical protein	-	3e-29	At5g47910	RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.91	PtpAffx.206736.1.S1_at	pmrna13375	hypothetical protein	-	4e-58	At2g25737	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.88	PtpAffx.79915.1.S1_s_at	CV233367	hypothetical protein	-	3e-6	At1g23870	ATTPS9	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	95.6	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.0	95.3	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.8	94.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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