Co-expression analysis

Gene ID	PtpAffx.99728.2.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g23790: unknown protein (HF=6e-2)
Module size	6 genes
NF	0.08
%ile	16.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.33	57.5	0.76	PtpAffx.99728.2.A1_at	BP933722	-	-	6e-2	At2g23790	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.77	PtpAffx.217425.1.S1_at	pmrna32678	hypothetical protein	-	5e+0	At3g15490	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.76	PtpAffx.218125.1.S1_a_at	pmrna33654	hypothetical protein	-	2e+1	Atmg01060	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.78	PtpAffx.221740.1.S1_at	pmrna38781	shikimate kinase	-	4e-3	At1g63220	C2 domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.73	PtpAffx.201364.1.S1_at	pmrna2700	hypothetical protein	-	9e-1	At5g61510	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.73	PtpAffx.210879.1.S1_at	pmrna21361	hypothetical protein	-	8e+0	At5g26990	drought-responsive family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.2	97.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9	92.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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